| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-12-13 | Separate bundle and individual files processing | Frederick Muriuki Muriithi | |
| Move the code processing the R/qtl2 bundle into a separate function and call it. Create a new (currently, failing) function to process the individual files. | |||
| 2024-12-13 | Refactor template to extend common base | Frederick Muriuki Muriithi | |
| Extend the common base template in order to reuse the common parts for uploading phenotypes. | |||
| 2024-12-13 | Allow choice between the two UI options | Frederick Muriuki Muriithi | |
| Allow the user to switch between using the R/qtl2 file format or uploading the individual files. | |||
| 2024-12-13 | Use new templates: | Frederick Muriuki Muriithi | |
| 2024-12-13 | Rename template | Frederick Muriuki Muriithi | |
| Rename original template to indicate it uses the R/qtl2 bundle format. | |||
| 2024-12-13 | Add page documentation. | Frederick Muriuki Muriithi | |
| 2024-12-13 | Prompt for the files. | Frederick Muriuki Muriithi | |
| 2024-12-13 | Prompt for file structure details. | Frederick Muriuki Muriithi | |
| 2024-12-12 | Add incomple template for uploading individual files. | Frederick Muriuki Muriithi | |
| 2024-12-12 | Create new base templates for upload of phenotype. | Frederick Muriuki Muriithi | |
| Implement the common UI features, for fetching publication details. | |||
| 2024-12-12 | Update link text. | Frederick Muriuki Muriithi | |
| 2024-12-10 | Add menu entry for platforms in "View Species" page. | Frederick Muriuki Muriithi | |
| 2024-12-10 | Retain population for "List Markers" page | Frederick Muriuki Muriithi | |
| For UI consistency, and as a convenience to the users, retain the population details for the "List Markers" page to help them navigate more easily using the breadcrumbs. | |||
| 2024-12-10 | Reorder menus in the populations page. | Frederick Muriuki Muriithi | |
| Make the order of the menus a little closer to the likely order of data upload. | |||
| 2024-12-10 | Deactivate access to incomplete/unimplemented features. | Frederick Muriuki Muriithi | |
| 2024-12-10 | Redirect if there's only a single phenotype dataset | Frederick Muriuki Muriithi | |
| If a particular population has only a single phenotype dataset, redirect to the dataset view page rather than listing the only dataset. | |||
| 2024-12-10 | Use specialised template renderer for phenotypes. | Frederick Muriuki Muriithi | |
| Use the specialised template renderer to keep the rendering consistent. | |||
| 2024-12-10 | UI: Remove extraneous text in "View*" pages. | Frederick Muriuki Muriithi | |
| 2024-12-10 | Improve breadcrumbs | Frederick Muriuki Muriithi | |
| Update the breadcrumb links such that each will lead back the parent section rather than to generic section pages. This is updated for the relevant parts of the UI. | |||
| 2024-12-09 | Prevent user from continuing on error. | Frederick Muriuki Muriithi | |
| 2024-12-09 | Prevent errors' table header from scrolling away. | Frederick Muriuki Muriithi | |
| 2024-12-09 | Handle common typo likely to exist in control files. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Display the files metadata in progress section. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Retrieve job files metadata. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Fix some linting and mypy issues. | Frederick Muriuki Muriithi | |
| 2024-12-03 | UI Styling: make table body text slightly smaller. | Frederick Muriuki Muriithi | |
| 2024-12-03 | UI: Clip text that is too long. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Improve error text | Frederick Muriuki Muriithi | |
| Move the list to the end of the text to make it easier to clip text in the UI. | |||
| 2024-12-03 | Update file metadata using a mapping | Frederick Muriuki Muriithi | |
| Update the metadata using a mapping rather than updating a field at a time to make it easier to ensure everything is updated in one go. | |||
| 2024-12-03 | Provide consistent way to build file-specific fully-qualified keys | Frederick Muriuki Muriithi | |
| 2024-12-03 | Improve UI: stdout/stderr output | Frederick Muriuki Muriithi | |
| Add styling to section and limit the height of the content. | |||
| 2024-12-03 | Display cell value | Frederick Muriuki Muriithi | |
| Display the cell value to enable the user compare the error message to the actual value, in order to figure out how to fix the error(s). | |||
| 2024-12-03 | Improve UI: Move if check out of table | Frederick Muriuki Muriithi | |
| Create a new section for the errors display, and only display the table if there is at least one error. | |||
| 2024-12-03 | Enable limiting of number of errors to fetch. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Save 'pheno' errors in redis as they are found. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Add some phenocovar metadata. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Fetch a jobs errors from its errors lists. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Save phenocovar errors in redis as they are found. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Pass the redis connection and fully qualified job id | Frederick Muriuki Muriithi | |
| Pass the redis connection on to the function used to build main since it might need to use a connection to redis. Also pass the computed fully qualified job id rather than recomputing it every time. Update dependent functions to take the new arguments. | |||
| 2024-12-03 | Cleanup linting and type (mypy) errors. | Frederick Muriuki Muriithi | |
| 2024-12-03 | Wrap everything in try-catch to handle errors gracefully. | Frederick Muriuki Muriithi | |
| Put everything in the build_main function within a try-catch block to ensure we capture all exceptions that might occur in different scripts and log them out. This helps with debugging errors in the asynchronous scripts. | |||
| 2024-12-02 | Add emphasis to important point. | Frederick Muriuki Muriithi | |
| 2024-12-02 | Fix typo. | Frederick Muriuki Muriithi | |
| 2024-12-02 | Send logs to STDOUT too. | Frederick Muriuki Muriithi | |
| 2024-12-02 | Launch job and redirect to job status page. | Frederick Muriuki Muriithi | |
| 2024-12-02 | Add UI to view status of the job as it runs. | Frederick Muriuki Muriithi | |
| 2024-12-02 | Return 0 on completion of QC processing. | Frederick Muriuki Muriithi | |
| 2024-12-02 | Change from 'pending' to 'started' on entry to script. | Frederick Muriuki Muriithi | |
| Update the status of the job from 'pending' to 'started' at the entry-point of the script. | |||
| 2024-11-22 | Remove local code that does db connection. | Frederick Muriuki Muriithi | |
| Reuse the code in gn-libs for connecting to the database, rather than using the replicated local code. | |||
| 2024-11-22 | Use gn-libs code for db connection. | Frederick Muriuki Muriithi | |
| Use the code in gn-libs to connect to the database, rather than a local module. | |||
 |
index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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