| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-07-26 | Add module to handle the JSON Web Keys. | Frederick Muriuki Muriithi | |
| 2024-07-26 | Add wrappers for OAuth2Session's `get` and `post` methods. Fix bugs. | Frederick Muriuki Muriithi | |
| 2024-07-26 | Provide UI for enabling login to the application. | Frederick Muriuki Muriithi | |
| 2024-07-26 | Initialise sessions for the application. | Frederick Muriuki Muriithi | |
| 2024-07-26 | Rename configuration variable | Frederick Muriuki Muriithi | |
| QCAPP_CONF --> UPLOADER_CONF | |||
| 2024-07-26 | Setup secrets from config file. | Frederick Muriuki Muriithi | |
| 2024-07-26 | authorisation module: utilities for basic authorisation. | Frederick Muriuki Muriithi | |
| 2024-07-26 | OAuth2 package: Handle OAuth2 related issues | Frederick Muriuki Muriithi | |
| Adds utilities to handle talking to the authentication/authorisation server. | |||
| 2024-07-26 | Add monadic wrapper for requests library. | Frederick Muriuki Muriithi | |
| 2024-07-25 | Add session module: handles session management. | Frederick Muriuki Muriithi | |
| 2024-07-25 | Fix typing and linting errors. | Frederick Muriuki Muriithi | |
| 2024-07-25 | Rename module: qc_app --> uploader | Frederick Muriuki Muriithi | |
| 2024-07-22 | Handle generic errors for chunked uploads better. | Frederick Muriuki Muriithi | |
| 2024-07-05 | bug: Return a hashable key, not a dict. | Frederick Muriuki Muriithi | |
| 2024-07-02 | Call correct method. | Frederick Muriuki Muriithi | |
| 2024-07-02 | Add URL information to debug information | Frederick Muriuki Muriithi | |
| To help with error reporting, as the user to also provide the URL of the error page to help with debugging issues that the user encounters. | |||
| 2024-07-02 | Ensure no duplicated values for the query. | Frederick Muriuki Muriithi | |
| 2024-07-01 | Respond with JSON. Handle error messages on UI. | Frederick Muriuki Muriithi | |
| 2024-07-01 | Display error better.test-resumablejs | Frederick Muriuki Muriithi | |
| 2024-07-01 | Check for genotype samples in the database | Frederick Muriuki Muriithi | |
| Check for genotype samples in both the R/qtl2 file and in the database. | |||
| 2024-06-27 | Remove unnecessary debugging statements. | Frederick Muriuki Muriithi | |
| 2024-06-27 | Handle chunks on backend and update UI with progress | Frederick Muriuki Muriithi | |
| Handle the uploaded chunks, enabling resumption of the upload if incomplete. Update the UI with the progress of the upload. | |||
| 2024-06-27 | Fix bug with the logging setup. | Frederick Muriuki Muriithi | |
| 2024-06-27 | Fix bugs in error-reporting. | Frederick Muriuki Muriithi | |
| 2024-06-27 | Upload chunking: Provide UI and code for drag&drop and chunking | Frederick Muriuki Muriithi | |
| * Use resumable.js to handle the drag-and-drop feature, and chunking. * Add styling for the drag-and-drop area, and provide visual indication when a file is successfully dropped and added to the upload list. | |||
| 2024-06-25 | Add route to fetch node-js modules. | Frederick Muriuki Muriithi | |
| 2024-06-20 | Check for special files that might share names/extensions | Frederick Muriuki Muriithi | |
| Check for special files and hidden files that might be inadvertently added to the zip bundle by the operating system in use that might share names and/or extensions with the main bundle files. | |||
| 2024-06-14 | Add banner similar to GeneNetwork2 | Frederick Muriuki Muriithi | |
| 2024-06-14 | Fix minor UI bugs | Frederick Muriuki Muriithi | |
| 2024-06-14 | Commit missing test. | Frederick Muriuki Muriithi | |
| 2024-06-14 | Update page headings | Frederick Muriuki Muriithi | |
| 2024-06-14 | Remove unused template imports | Frederick Muriuki Muriithi | |
| 2024-06-14 | Use bootstrap for displaying progress widget | Frederick Muriuki Muriithi | |
| This commit converts the progress indication widget into a bootstrap modal dialog, and updates the javascript to prevent the code from interacting with bootstrap in unpredictable ways. | |||
| 2024-06-14 | jquery, bootstrap: update page dependencies | Frederick Muriuki Muriithi | |
| * Add jquery which is needed for bootstrap plugins. * Add the default bootstrap theme. * Provide route to serve up jquery libraries. | |||
| 2024-06-14 | Move the modal to top of page to avoid display issues | Frederick Muriuki Muriithi | |
| According to https://getbootstrap.com/docs/3.3/javascript/#callout-modal-markup-placement the bootstrap modal dialogs should be placed at the top of the page to avoid other components affecting their display and/or functionality. | |||
| 2024-06-13 | Fix tests and issues caught by tests.update-templates-for-bootstrap | Frederick Muriuki Muriithi | |
| 2024-06-13 | Handle HTTP errors gracefully. | Frederick Muriuki Muriithi | |
| 2024-06-13 | Update the help text. | Frederick Muriuki Muriithi | |
| 2024-06-13 | Clean up landing page | Frederick Muriuki Muriithi | |
| Leave only data upload type selection on landing page. | |||
| 2024-06-13 | Update html templates to use bootstrap for styling | Frederick Muriuki Muriithi | |
| 2024-06-12 | Update documentation | Frederick Muriuki Muriithi | |
| 2024-06-12 | Update templates to use bootstrap classes. | Frederick Muriuki Muriithi | |
| 2024-06-12 | Use bundled bootstrap for styling the UI | Frederick Muriuki Muriithi | |
| Use bootstrap to eliminate a myriad of UI styling headaches. | |||
| 2024-06-12 | Make URI and UI correspond to each other. | Frederick Muriuki Muriithi | |
| Formerly, the URI and UI were not corresponding to each other, e.g. the URI /upload/samples/select_species would display the UI for selecting/creating the population. This was very confusing. This commit fixes that. The commit also adds in user input validation to catch input errors. | |||
| 2024-06-12 | Bug: Provide missing argument. Remove unused verr variable. | Frederick Muriuki Muriithi | |
| 2024-06-12 | Validate input before attempting to use it. | Frederick Muriuki Muriithi | |
| 2024-06-12 | Provide an input validation module. | Frederick Muriuki Muriithi | |
| 2024-05-05 | Fix indentation. | Frederick Muriuki Muriithi | |
| 2024-05-05 | Provide default for InbredSetId | Frederick Muriuki Muriithi | |
| The `InbredSetId` field in the `InbredSet` table in MariaDB is in some instances a required field, so we need to provide a value. This value should be the same as that for the `Id` field, that we do not previously know. This commit provides a value of zero (0) as the default. This value is subsequently updated to be same as that of the `Id` field. | |||
| 2024-04-17 | Use `cursor.lastrowid` to get row identifier | Frederick Muriuki Muriithi | |
| Use the more robust `cursor.lastrowid` to get the row identifier value, rather than using the `SELECT MAX(Id) …` form. With the `cursor.lastrowid` form, we do not have to remember to add 1 to the value to avoid conflict. | |||
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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