diff options
Diffstat (limited to 'uploader')
| -rw-r--r-- | uploader/phenotypes/views.py | 24 |
1 files changed, 13 insertions, 11 deletions
diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index ec07c0c..d2c5be1 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -967,20 +967,22 @@ def edit_upload_phenotype_data(# pylint: disable=[unused-argument] jobs_db = app.config["ASYNCHRONOUS_JOBS_SQLITE_DB"] with sqlite3.connection(jobs_db) as conn: job_id = uuid.uuid4() + job_cmd = [ + sys.executable, "-u", + "-m", "scripts.phenotypes_bulk_edit", + app.config["SQL_URI"], + jobs_db, + str(job_id), + "--log-level", + logging.getLevelName( + app.logger.getEffectiveLevel() + ).lower() + ] + app.logger.debug("Phenotype-edit, bulk-upload command: %s", job_cmd) _job = gnlibs_jobs.launch_job( gnlibs_jobs.initialise_job(conn, job_id, - [ - sys.executable, "-u", - "-m", "scripts.phenotypes_bulk_edit", - app.config["SQL_URI"], - jobs_db, - str(job_id), - "--log-level", - logging.getLevelName( - app.logger.getEffectiveLevel() - ).lower() - ], + job_cmd, "phenotype-bulk-edit", extra_meta = { "edit-file": str(edit_file), |