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-rw-r--r--uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html82
1 files changed, 24 insertions, 58 deletions
diff --git a/uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html b/uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html
index a1953df..8f67baa 100644
--- a/uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html
+++ b/uploader/templates/phenotypes/add-phenotypes-with-rqtl2-bundle.html
@@ -1,4 +1,4 @@
-{%extends "phenotypes/base.html"%}
+{%extends "phenotypes/add-phenotypes-base.html"%}
{%from "flash_messages.html" import flash_all_messages%}
{%from "macro-table-pagination.html" import table_pagination%}
{%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%}
@@ -20,54 +20,35 @@
</li>
{%endblock%}
-{%block contents%}
-{{flash_all_messages()}}
-
-<div class="row">
- <form id="frm-add-phenotypes"
- method="POST"
- enctype="multipart/form-data"
- action="{{url_for('species.populations.phenotypes.add_phenotypes',
- species_id=species.SpeciesId,
- population_id=population.Id,
- dataset_id=dataset.Id)}}">
- <legend>Add New Phenotypes</legend>
-
- <div class="form-text help-block">
- <p>Select the zip file bundle containing information on the phenotypes you
- wish to upload, then click the "Upload Phenotypes" button below to
- upload the data.</p>
- <p>If you wish to upload the files individually instead,
- <a href="{{url_for('species.populations.phenotypes.add_phenotypes',
+{%block frm_add_phenotypes_documentation%}
+<p>Select the zip file bundle containing information on the phenotypes you
+ wish to upload, then click the "Upload Phenotypes" button below to
+ upload the data.</p>
+<p>If you wish to upload the files individually instead,
+ <a href="{{url_for('species.populations.phenotypes.add_phenotypes',
species_id=species.SpeciesId,
population_id=population.Id,
dataset_id=dataset.Id)}}"
- title="">click here</a>.</p>
- <p>See the <a href="#section-file-formats">File Formats</a> section below
- to get an understanding of what is expected of the bundle files you
- upload.</p>
- <p><strong class="text-warning">This will not update any existing phenotypes!</strong></p>
- </div>
-
- <div class="form-group">
- <label for="finput-phenotypes-bundle" class="form-label">
- Phenotypes Bundle</label>
- <input type="file"
- id="finput-phenotypes-bundle"
- name="phenotypes-bundle"
- accept="application/zip, .zip"
- required="required"
- class="form-control" />
- </div>
+ title="">click here</a>.</p>
+<p>See the <a href="#section-file-formats">File Formats</a> section below
+ to get an understanding of what is expected of the bundle files you
+ upload.</p>
+{%endblock%}
- <div class="form-group">
- <input type="submit"
- value="upload phenotypes"
- class="btn btn-primary" />
- </div>
- </form>
+{%block frm_add_phenotypes_elements%}
+<div class="form-group">
+ <label for="finput-phenotypes-bundle" class="form-label">
+ Phenotypes Bundle</label>
+ <input type="file"
+ id="finput-phenotypes-bundle"
+ name="phenotypes-bundle"
+ accept="application/zip, .zip"
+ required="required"
+ class="form-control" />
</div>
+{%endblock%}
+{%block page_documentation%}
<div class="row">
<h2 class="heading" id="section-file-formats">File Formats</h2>
<p>We accept an extended form of the
@@ -219,19 +200,4 @@
<code>pheno_transposed: True</code>, then the file will be a matrix of
<em>phenotypes × individuals</em>.</p>
</div>
-
-<div class="row text-warning">
- <h3 class="subheading">Notes for Devs (well… Fred, really.)</h3>
- <p>Use the following resources for automated retrieval of certain data</p>
- <ul>
- <li><a href="https://www.ncbi.nlm.nih.gov/pmc/tools/developers/"
- title="NCBI APIs: Retrieve articles' metadata etc.">
- NCBI APIS</a></li>
- </ul>
-</div>
-
-{%endblock%}
-
-{%block sidebarcontents%}
-{{display_pheno_dataset_card(species, population, dataset)}}
{%endblock%}