diff options
Diffstat (limited to 'uploader/templates')
| -rw-r--r-- | uploader/templates/phenotypes/add-phenotypes-raw-files.html | 34 |
1 files changed, 28 insertions, 6 deletions
diff --git a/uploader/templates/phenotypes/add-phenotypes-raw-files.html b/uploader/templates/phenotypes/add-phenotypes-raw-files.html index 1f7ec66..5c6aaab 100644 --- a/uploader/templates/phenotypes/add-phenotypes-raw-files.html +++ b/uploader/templates/phenotypes/add-phenotypes-raw-files.html @@ -103,6 +103,28 @@ <a href="#docs-file-na" title="Documentation for no-value fields"> documentation for more information</a>.</span> </div> + + <div class="form-check form-group"> + <div class=""> + <input id="chk-file-transposed" + name="file-transposed" + type="checkbox" + class="form-check-input" + style="border: solid #8EABF0" /> + <label for="chk-file-transposed" class="form-check-label"> + File transposed</label> + </div> + <span class="form-text text-muted"> + We expect the data in the file as a matrix of + <strong>samples × phenotypes</strong>, but it could be your file is + transposed, (i.e. it is a matrix of + “<em>phenotypes × samples</em>”, rather than the expected + form). + <br /> + If that is the case for your files, mark your files as trasposed by + ensuring that this checkbox is checked. + </span> + </div> </fieldset> <fieldset id="fldset-data-files"> @@ -326,15 +348,15 @@ <span id="docs-file-phenotype-data"></span> <span id="docs-file-phenotype-se"></span> <span id="docs-file-phenotype-n"></span> - <p>The data is a matrix of <em>phenotypes × individuals</em>, e.g.</p> + <p>The data is a matrix of <em>samples(or individuals) × phenotypes</em>, e.g.</p> <code> # num-cases: 2549 # num-phenos: 13 - id,IND001,IND002,IND003,IND004,…<br /> - pheno10001,61.400002,54.099998,483,49.799999,…<br /> - pheno10002,49,50.099998,403,45.5,…<br /> - pheno10003,62.5,53.299999,501,62.900002,…<br /> - pheno10004,53.099998,55.099998,403,NA,…<br /> + id,pheno10001,pheno10002,pheno10003,pheno10004,53.099998,…<br /> + IND001,61.400002,49,62.5,55.099998,…<br /> + IND002,54.099998,50.099998,53.299999,55.099998,…<br /> + IND003,483,403,501,403,…<br /> + IND004,49.799999,45.5,62.900002,NA,…<br /> ⋮<br /></code> <p>where <code>IND001,IND002,IND003,IND004,…</code> are the |