aboutsummaryrefslogtreecommitdiff
path: root/uploader/templates/species/edit-species.html
diff options
context:
space:
mode:
Diffstat (limited to 'uploader/templates/species/edit-species.html')
-rw-r--r--uploader/templates/species/edit-species.html177
1 files changed, 177 insertions, 0 deletions
diff --git a/uploader/templates/species/edit-species.html b/uploader/templates/species/edit-species.html
new file mode 100644
index 0000000..5a26455
--- /dev/null
+++ b/uploader/templates/species/edit-species.html
@@ -0,0 +1,177 @@
+{%extends "species/base.html"%}
+{%from "flash_messages.html" import flash_all_messages%}
+
+{%block title%}Edit Species{%endblock%}
+
+{%block pagetitle%}Edit Species{%endblock%}
+
+{%block css%}
+<style type="text/css">
+ .card {
+ margin-top: 0.3em;
+ border-width: 1px;
+ border-style: solid;
+ border-radius: 0.3em;
+ border-color: #AAAAAA;
+ padding: 0.5em;
+ }
+</style>
+{%endblock%}
+
+{%block lvl2_breadcrumbs%}
+<li {%if activelink=="edit-species"%}
+ class="breadcrumb-item active"
+ {%else%}
+ class="breadcrumb-item"
+ {%endif%}>
+ <a href="{{url_for('species.edit_species_extra',
+ species_id=species.SpeciesId)}}">Edit</a>
+</li>
+{%endblock%}
+
+{%block contents%}
+{{flash_all_messages()}}
+<div class="row">
+ <form id="frm-edit-species"
+ method="POST"
+ action="{{url_for('species.edit_species_extra',
+ species_id=species.SpeciesId)}}">
+
+ <legend>Edit Extra Detail for Species '{{species.FullName}}'</legend>
+
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+
+ <div class="form-group">
+ <label for="lbl-species-taxonid" class="form-label">
+ Taxonomy Id
+ </label>
+ <label id="lbl-species-taxonid"
+ disabled="disabled"
+ class="form-control">{{species.TaxonomyId}}</label>
+ </div>
+
+ <div class="form-group">
+ <label for="txt-species-name" class="form-label">
+ Common Name
+ </label>
+ <input type="text"
+ id="txt-species-name"
+ name="species_name"
+ required="required"
+ value="{{species.SpeciesName}}"
+ class="form-control" />
+ <small class="form-text text-muted">
+ This is the layman's name for the species, e.g. mouse</mall>
+ </div>
+
+ <div class="form-group">
+ <label for="txt-species-fullname" class="form-label">
+ Scientific Name
+ </label>
+ <input type="text"
+ id="txt-species-fullname"
+ name="species_fullname"
+ required="required"
+ value="{{species.FullName}}"
+ class="form-control" />
+ <small class="form-text text-muted">
+ A scientific name for the species that mostly adheres to the biological
+ binomial nomenclature system.</small>
+ </div>
+
+ <div class="form-group">
+ <label for="select-species-family" class="form-label">
+ Family
+ </label>
+ <select id="select-species-family"
+ name="species_family"
+ class="form-control">
+ <option value="">Select the family</option>
+ {%for family in families%}
+ <option value="{{family}}"
+ {%if species.Family == family%}
+ selected="selected"
+ {%endif%}>{{family}}</option>
+ {%endfor%}
+ </select>
+ <small class="form-text text-muted">
+ A general classification for the species. This is mostly for use in
+ GeneNetwork's menus.</small>
+ </div>
+
+ <div class="form-group">
+ <label for="txt-species-familyorderid" class="form-label">
+ Family Order Id
+ </label>
+ <input type="number"
+ id="txt-species-familyorderid"
+ name="species_familyorderid"
+ value="{{species.FamilyOrderId}}"
+ required="required"
+ class="form-control" />
+ <small class="form-text text-muted">
+ This is a number that determines the order of the "Family" groupings
+ above in the GeneNetwork menus. This is an integer value that's manually
+ assigned.</small>
+ </div>
+
+ <div class="form-group">
+ <label for="txt-species-orderid" class="form-label">
+ Order Id
+ </label>
+ <input type="number"
+ id="txt-species-orderid"
+ name="species_orderid"
+ value="{{species.OrderId or (max_order_id + 5)}}"
+ class="form-control" />
+ <small class="form-text text-muted">
+ This integer value determines the order of the species in relation to
+ each other, but also within the respective "Family" groups.</small>
+ </div>
+
+ <div class="form-group">
+ <input type="submit" value="Submit Changes" class="btn btn-primary" />
+ </div>
+
+ </form>
+</div>
+{%endblock%}
+
+{%block sidebarcontents%}
+
+<div class="card">
+ <div class="card-body">
+ <h5 class="card-title">Family Order</h5>
+ <div class="card-text">
+ <p>The current family order is as follows</p>
+ <table class="table">
+ <thead>
+ <tr>
+ <th>Family Order Id</th>
+ <th>Family</th>
+ </tr>
+ </thead>
+ <tbody>
+ {%for item in family_order%}
+ <tr>
+ <td>{{item[0]}}</td>
+ <td>{{item[1]}}</td>
+ </tr>
+ {%endfor%}
+ </tbody>
+ </table>
+ </div>
+ </div>
+</div>
+
+<div class="card">
+ <div class="card-body">
+ <h5 class="card-title">Order ID</h5>
+ <div class="card-text">
+ <p>The current largest OrderID is: {{max_order_id}}</p>
+ <p>We recommend giving a new species an order ID that is five more than
+ the current highest i.e. {{max_order_id + 5}}.</p>
+ </div>
+ </div>
+</div>
+{%endblock%}