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Diffstat (limited to 'uploader/templates/rqtl2/select-probeset-dataset.html')
| -rw-r--r-- | uploader/templates/rqtl2/select-probeset-dataset.html | 191 |
1 files changed, 0 insertions, 191 deletions
diff --git a/uploader/templates/rqtl2/select-probeset-dataset.html b/uploader/templates/rqtl2/select-probeset-dataset.html deleted file mode 100644 index 74f8f69..0000000 --- a/uploader/templates/rqtl2/select-probeset-dataset.html +++ /dev/null @@ -1,191 +0,0 @@ -{%extends "base.html"%} -{%from "flash_messages.html" import flash_messages%} - -{%block title%}Upload R/qtl2 Bundle{%endblock%} - -{%block contents%} -<h2 class="heading">Phenotype(ProbeSet) Dataset</h2> - -<div class="row"> - <p>The R/qtl2 bundle you uploaded contains (a) "<strong>pheno</strong>" - file(s). This data needs to be organised under a dataset.</p> - <p>This page gives you the ability to do that.</p> -</div> - -{%if datasets | length > 0%} -<div class="row"> - <form method="POST" - action="{{url_for('expression-data.rqtl2.select_probeset_dataset', - species_id=species.SpeciesId, population_id=population.Id)}}" - id="frm:select-probeset-dataset"> - <legend class="heading">Select from existing ProbeSet datasets</legend> - {{flash_messages("error-rqtl2")}} - - <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> - <input type="hidden" name="population_id" - value="{{population.InbredSetId}}" /> - <input type="hidden" name="rqtl2_bundle_file" - value="{{rqtl2_bundle_file}}" /> - <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" /> - <input type="hidden" name="tissueid" value="{{tissue.Id}}" /> - <input type="hidden" name="probe-study-id" value="{{probe_study.Id}}" /> - - <div class="form-group"> - <label class="form-label" for="select:probe-dataset">Dataset</label> - <select id="select:probe-dataset" - name="probe-dataset-id" - required="required" - {%if datasets | length == 0%}disabled="disabled"{%endif%} - class="form-control" - aria-describedby="help-probe-dataset"> - <option value="">Select a dataset</option> - {%for dataset in datasets%} - <option value={{dataset.Id}}> - {{dataset.Name}} - {%if dataset.FullName%} - -- ({{dataset.FullName}}) - {%endif%} - </option> - {%endfor%} - </select> - - <span id="help-probe-dataset" class="form-text text-muted"> - Select from existing ProbeSet datasets.</span> - </div> - - <button type="submit" class="btn btn-primary" />select dataset</button> -</form> -</div> - -<div class="row"> - <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p> -</div> -{%endif%} - -<div class="row"> - <p>Create an entirely new ProbeSet dataset for your data.</p> -</div> - -<div class="row"> - <form method="POST" - action="{{url_for('expression-data.rqtl2.create_probeset_dataset', - species_id=species.SpeciesId, population_id=population.Id)}}" - id="frm:create-probeset-dataset"> - <legend class="heading">Create a new ProbeSet dataset</legend> - {{flash_messages("error-rqtl2-create-probeset-dataset")}} - - <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> - <input type="hidden" name="population_id" - value="{{population.InbredSetId}}" /> - <input type="hidden" name="rqtl2_bundle_file" - value="{{rqtl2_bundle_file}}" /> - <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" /> - <input type="hidden" name="tissueid" value="{{tissue.Id}}" /> - <input type="hidden" name="probe-study-id" value="{{probe_study.Id}}" /> - - <div class="form-group"> - <label class="form-label" for="select:average">averaging method</label> - <select id="select:average" - name="averageid" - required="required" - class="form-control" - aria-describedby="help-average"> - <option value="">Select averaging method</option> - {%for avgmethod in avgmethods%} - <option value="{{avgmethod.Id}}"> - {{avgmethod.Name}} - {%if avgmethod.Normalization%} - ({{avgmethod.Normalization}}) - {%endif%} - </option> - {%endfor%} - </select> - - <span id="help-average" class="form-text text-muted"> - Select the averaging method used for your data. - </span> - </div> - - <div class="form-group"> - <label class="form-label" for="txt:datasetname">Name</label> - <input type="text" id="txt:datasetname" name="datasetname" - required="required" - maxlength="40" - title="Name of the dataset, e.g 'BXDMicroArray_ProbeSet_June03'. (Required)" - class="form-control" - aria-describedby="help-dataset-name" /> - - <span id="help-dataset-name" class="form-text text-muted"> - Provide a name for the dataset e.g. "BXDMicroArray_ProbeSet_June03". This - is mandatory <strong>MUST</strong> be provided. - </span> - </div> - - <div class="form-group"> - <label class="form-label" for="txt:datasetfullname">Full Name</label> - <input type="text" id="txt:datasetfullname" name="datasetfullname" - required="required" - maxlength="100" - title="A longer name for the dataset, e.g. 'UTHSC Brain mRNA U74Av2 (Jun03) MAS5'. (Required)" - class="form-control" - aria-describedby="help-dataset-fullname" /> - - <span id="help-dataset-fullname" class="form-text text-muted"> - Provide a longer, more descriptive name for the dataset e.g. - "UTHSC Brain mRNA U74Av2 (Jun03) MAS5". This is mandatory and - <strong>MUST</strong> be provided. - </span> - </div> - - <div class="form-group"> - <label class="form-label" for="txt:datasetshortname">Short Name</label> - <input type="text" id="txt:datasetshortname" name="datasetshortname" - maxlength="100" - title="An abbreviated name for the dataset, e.g 'Br_U_0603_M'. (Optional)" - class="form-control" - aria-describedby="help-dataset-shortname" /> - - <span id="help-dataset-shortname" class="form-text text-muted"> - Provide a longer, more descriptive name for the dataset e.g. "Br_U_0603_M". - This is optional. - </span> - </div> - - <div class="form-check"> - <input type="checkbox" id="chk:public" name="datasetpublic" - checked="checked" - title="Whether or not the dataset is accessible by the general public." - class="form-check-input" - aria-describedby="help-public" /> - <label class="form-check-label" for="chk:datasetpublic">Public?</label> - - <span id="help-public" class="form-text text-muted"> - Check to specify that the dataset will be publicly available. Uncheck to - limit access to the dataset. - </span> - </div> - - <div class="form-group"> - <label class="form-label" for="select:datasetdatascale">Data Scale</label> - <select id="select:datasetdatascale" - name="datasetdatascale" - required="required" - class="form-control" - aria-describedby="help-dataset-datascale"> - <option value="log2" selected="selected">log2</option> - <option value="z_score">z_score</option> - <option value="log2_ratio">log2_ratio</option> - <option value="linear">linear</option> - <option value="linear_positive">linear_positive</option> - </select> - - <span id="help-dataset-datascale" class="form-text text-muted"> - Select from a list of scaling methods. - </span> - </div> - - <button type="submit" class="btn btn-primary">create dataset</button> - </form> -</div> - -{%endblock%} |