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Diffstat (limited to 'uploader/templates/rqtl2/select-geno-dataset.html')
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diff --git a/uploader/templates/rqtl2/select-geno-dataset.html b/uploader/templates/rqtl2/select-geno-dataset.html new file mode 100644 index 0000000..873f9c3 --- /dev/null +++ b/uploader/templates/rqtl2/select-geno-dataset.html @@ -0,0 +1,144 @@ +{%extends "base.html"%} +{%from "flash_messages.html" import flash_messages%} + +{%block title%}Upload R/qtl2 Bundle{%endblock%} + +{%block contents%} +<h2 class="heading">Select Genotypes Dataset</h2> + +<div class="row"> + <p>Your R/qtl2 files bundle contains a "geno" specification. You will + therefore need to select from one of the existing Genotype datasets or + create a new one.</p> + <p>This is the dataset where your data will be organised under.</p> +</div> + +<div class="row"> + <form id="frm-upload-rqtl2-bundle" + action="{{url_for('upload.rqtl2.select_geno_dataset', + species_id=species.SpeciesId, + population_id=population.InbredSetId)}}" + method="POST" + enctype="multipart/form-data"> + <legend class="heading">select from existing genotype datasets</legend> + + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <input type="hidden" name="population_id" + value="{{population.InbredSetId}}" /> + <input type="hidden" name="rqtl2_bundle_file" + value="{{rqtl2_bundle_file}}" /> + + {{flash_messages("error-rqtl2-select-geno-dataset")}} + + <div class="form-group"> + <legend>Datasets</legend> + <label for="select:geno-datasets" class="form-label">Dataset</label> + <select id="select:geno-datasets" + name="geno-dataset-id" + required="required" + {%if datasets | length == 0%} + disabled="disabled" + {%endif%} + class="form-control" + aria-describedby="help-geno-dataset-select-dataset"> + <option value="">Select dataset</option> + {%for dset in datasets%} + <option value="{{dset['Id']}}">{{dset["Name"]}} ({{dset["FullName"]}})</option> + {%endfor%} + </select> + <span id="help-geno-dataset-select-dataset" class="form-text text-muted"> + Select from the existing genotype datasets for species + {{species.SpeciesName}} ({{species.FullName}}). + </span> + </div> + + <button type="submit" class="btn btn-primary">select dataset</button> + </form> +</div> + +<div class="row"> + <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p> +</div> + +<div class="row"> + <form id="frm-upload-rqtl2-bundle" + action="{{url_for('upload.rqtl2.create_geno_dataset', + species_id=species.SpeciesId, + population_id=population.InbredSetId)}}" + method="POST" + enctype="multipart/form-data"> + <legend class="heading">create a new genotype dataset</legend> + + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <input type="hidden" name="population_id" + value="{{population.InbredSetId}}" /> + <input type="hidden" name="rqtl2_bundle_file" + value="{{rqtl2_bundle_file}}" /> + + {{flash_messages("error-rqtl2-create-geno-dataset")}} + + <div class="form-group"> + <label for="txt:dataset-name" class="form-label">Name</label> + <input type="text" + id="txt:dataset-name" + name="dataset-name" + maxlength="100" + required="required" + class="form-control" + aria-describedby="help-geno-dataset-name" /> + <span id="help-geno-dataset-name" class="form-text text-muted"> + Provide the new name for the genotype dataset, e.g. "BXDGeno" + </span> + </div> + + <div class="form-group"> + <label for="txt:dataset-fullname" class="form-label">Full Name</label> + <input type="text" + id="txt:dataset-fullname" + name="dataset-fullname" + required="required" + maxlength="100" + class="form-control" + aria-describedby="help-geno-dataset-fullname" /> + + <span id="help-geno-dataset-fullname" class="form-text text-muted"> + Provide a longer name that better describes the genotype dataset, e.g. + "BXD Genotypes" + </span> + </div> + + <div class="form-group"> + <label for="txt:dataset-shortname" class="form-label">Short Name</label> + <input type="text" + id="txt:dataset-shortname" + name="dataset-shortname" + maxlength="100" + class="form-control" + aria-describedby="help-geno-dataset-shortname" /> + + <span id="help-geno-dataset-shortname" class="form-text text-muted"> + Provide a short name for the genotype dataset. This is optional. If not + provided, we'll default to the same value as the "Name" above. + </span> + </div> + + <div class="form-group"> + <input type="checkbox" + id="chk:dataset-public" + name="dataset-public" + checked="checked" + class="form-check" + aria-describedby="help-geno-datasent-public" /> + <label for="chk:dataset-public" class="form-check-label">Public?</label> + + <span id="help-geno-dataset-public" class="form-text text-muted"> + Specify whether the dataset will be available publicly. Check to make the + dataset publicly available and uncheck to limit who can access the dataset. + </span> + </div> + + <button type="submit" class="btn btn-primary">create new dataset</button> + </form> +</div> + +{%endblock%} |