diff options
Diffstat (limited to 'uploader/templates/populations')
4 files changed, 48 insertions, 3 deletions
diff --git a/uploader/templates/populations/create-population.html b/uploader/templates/populations/create-population.html index b57afba..b05ce37 100644 --- a/uploader/templates/populations/create-population.html +++ b/uploader/templates/populations/create-population.html @@ -107,7 +107,10 @@ value="{{error_values.population_code or ''}}" class="form-control" /> <small class="form-text text-muted"> - … document what this field is for … + <p class="text-danger"> + <span class="glyphicon glyphicon-exclamation-sign"></span> + What is this field is for? Confirm with Arthur and the rest. + </p> </small> </div> @@ -159,7 +162,10 @@ {%endfor%} </select> <small class="form-text text-muted"> - <p>… provide some documentation on what this field does …</p> + <p> + This is a rough grouping of the populations in GeneNetwork into lists + of common types of populations. + </p> </small> </div> @@ -207,6 +213,28 @@ {%endif%}>{{gtype}}</option> {%endfor%} </select> + <small class="form-text text-muted text-danger"> + <p> + <span class="glyphicon glyphicon-exclamation-sign"></span> + This might be a poorly named field. + </p> + <p> + It probably has more to do with the mating crosses/crossings used to + produce the individuals in the population. I am no biologist, however, + and I'm leaving this here to remind myself to confirm this. + </p> + <p> + I still don't know what riset is.<br /> + … probably something to do with Recombinant Inbred Strains + </p> + <p> + Possible resources for this: + <ul> + <li>https://www.informatics.jax.org/silver/chapters/3-2.shtml</li> + <li>https://www.informatics.jax.org/silver/chapters/9-2.shtml</li> + </ul> + </p> + </small> </div> <div class="form-group"> diff --git a/uploader/templates/populations/index.html b/uploader/templates/populations/index.html index 3314516..4354e02 100644 --- a/uploader/templates/populations/index.html +++ b/uploader/templates/populations/index.html @@ -11,8 +11,14 @@ {{flash_all_messages()}} <div class="row"> - To continue, you need to select the species: + <p> + Your experiment data will relate to a particular population from a + particular species. Let us know what species it is you want to work with + below. + </p> +</div> +<div class="row"> {{select_species_form(url_for("species.populations.index"), species)}} </div> {%endblock%} diff --git a/uploader/templates/populations/list-populations.html b/uploader/templates/populations/list-populations.html index c83c18c..7c7145f 100644 --- a/uploader/templates/populations/list-populations.html +++ b/uploader/templates/populations/list-populations.html @@ -51,6 +51,7 @@ <caption>Populations for {{species.FullName}}</caption> <thead> <tr> + <th>#</th> <th>Name</th> <th>Full Name</th> <th>Description</th> @@ -60,6 +61,7 @@ <tbody> {%for population in populations%} <tr> + <td>{{population["sequence_number"]}}</td> <td> <a href="{{url_for('species.populations.view_population', species_id=species.SpeciesId, diff --git a/uploader/templates/populations/view-population.html b/uploader/templates/populations/view-population.html index 31db54f..1e2964e 100644 --- a/uploader/templates/populations/view-population.html +++ b/uploader/templates/populations/view-population.html @@ -23,6 +23,9 @@ {%block contents%} <div class="row"> <h2>Population Details</h2> + + {{flash_all_messages()}} + <dl> <dt>Name</dt> <dd>{{population.Name}}</dd> @@ -59,6 +62,12 @@ <nav class="nav"> <ul> <li> + <a href="{{url_for('species.populations.genotypes.list_genotypes', + species_id=species.SpeciesId, + population_id=population.Id)}}" + title="Upload genotypes for {{species.FullName}}">Upload Genotypes</a> + </li> + <li> <a href="{{url_for('species.populations.samples.list_samples', species_id=species.SpeciesId, population_id=population.Id)}}" |