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+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Tissue</h2>
+
+<div class="row">
+ <p>The data you are uploading concerns a tissue, cell, organ, or other
+ biological material used in an experiment.</p>
+ <p>Select the appropriate biological material below</p>
+</div>
+
+{%if tissues | length > 0%}
+<div class="row">
+ <form method="POST"
+ action="{{url_for('expression-data.rqtl2.select_tissue',
+ species_id=species.SpeciesId, population_id=population.Id)}}"
+ id="frm:select-probeset-dataset">
+ <legend class="heading">Select from existing ProbeSet datasets</legend>
+ {{flash_messages("error-select-tissue")}}
+
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+ <input type="hidden" name="population_id"
+ value="{{population.InbredSetId}}" />
+ <input type="hidden" name="rqtl2_bundle_file"
+ value="{{rqtl2_bundle_file}}" />
+ <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
+
+ <div class="form-group">
+ <label class="form-label" for="select-tissue">Tissue</label>
+ <select id="select-tissue"
+ name="tissueid"
+ required="required"
+ {%if tissues | length == 0%}disabled="disabled"{%endif%}
+ class="form-control"
+ aria-describedby="help-select-tissue">
+ <option value="">Select a tissue</option>
+ {%for tissue in tissues%}
+ <option value={{tissue.Id}}>
+ {{tissue.Name}}
+ {%if tissue.Short_Name%}
+ -- ({{tissue.Short_Name}})
+ {%endif%}
+ </option>
+ {%endfor%}
+ </select>
+
+ <span id="help-select-tissue" class="form-text text-muted">
+ Select from existing biological material.</span>
+ </div>
+
+ <button type="submit" class="btn btn-primary">use selected</button>
+ </form>
+</div>
+
+<div class="row">
+ <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
+</div>
+{%endif%}
+
+<div class="row">
+ <p>If you cannot find the biological material in the drop-down above, add it
+ to the system below.</p>
+
+ <form method="POST"
+ action="{{url_for('expression-data.rqtl2.create_tissue',
+ species_id=species.SpeciesId, population_id=population.Id)}}"
+ id="frm:create-probeset-dataset">
+ <legend class="heading">Add new tissue, organ or biological material</legend>
+ {{flash_messages("error-create-tissue")}}
+
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+ <input type="hidden" name="population_id"
+ value="{{population.InbredSetId}}" />
+ <input type="hidden" name="rqtl2_bundle_file"
+ value="{{rqtl2_bundle_file}}" />
+ <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
+
+ <div class="form-group">
+ <label class="form-label" for="tissue-name">name</label>
+ <input type="text"
+ id="txt-tissuename"
+ name="tissuename"
+ required="required"
+ title = "A name to identify the tissue, organ or biological material."
+ class="form-control"
+ aria-describedby="help-tissue-name" />
+
+ <span class="form-text text-muted" id="help-tissue-name">
+ A name to identify the tissue, organ or biological material.
+ </span>
+ </div>
+
+ <div class="form-group">
+ <label for="txt-shortname" class="form-label">short name</label>
+ <input type="text" id="txt-tissueshortname" name="tissueshortname"
+ required="required"
+ maxlength="7"
+ title="A short name (e.g. 'Mam') for the biological material."
+ class="form-control"
+ aria-describedby="help-tissue-short-name" />
+
+ <span class="form-text text-muted" id="help-tissue-short-name">
+ Provide a short name for the tissue, organ or biological material used in
+ the experiment.
+ </span>
+ </div>
+
+ <button type="submit" class="btn btn-primary" />add new material</button>
+</form>
+</div>
+
+{%endblock%}