diff options
Diffstat (limited to 'uploader/templates/phenotypes')
| -rw-r--r-- | uploader/templates/phenotypes/add-phenotypes-base.html | 43 | ||||
| -rw-r--r-- | uploader/templates/phenotypes/create-dataset.html | 6 | ||||
| -rw-r--r-- | uploader/templates/phenotypes/load-phenotypes-success.html | 42 |
3 files changed, 69 insertions, 22 deletions
diff --git a/uploader/templates/phenotypes/add-phenotypes-base.html b/uploader/templates/phenotypes/add-phenotypes-base.html index a7aaeb0..01cd0fe 100644 --- a/uploader/templates/phenotypes/add-phenotypes-base.html +++ b/uploader/templates/phenotypes/add-phenotypes-base.html @@ -92,48 +92,53 @@ [ {data: "index"}, { + searchable: true, data: (pub) => { - if(pub.PubMed_ID) { - return `<a href="https://pubmed.ncbi.nlm.nih.gov/` + - `${pub.PubMed_ID}/" target="_blank" ` + - `title="Link to publication on NCBI.">` + - `${pub.PubMed_ID}</a>`; - } - return ""; + if(pub.PubMed_ID) { + return `<a href="https://pubmed.ncbi.nlm.nih.gov/` + + `${pub.PubMed_ID}/" target="_blank" ` + + `title="Link to publication on NCBI.">` + + `${pub.PubMed_ID}</a>`; + } + return ""; } }, { + searchable: true, data: (pub) => { - var title = "⸻"; - if(pub.Title) { - title = pub.Title - } - return `<a href="/publications/view/${pub.Id}" ` + + var title = "⸻"; + if(pub.Title) { + title = pub.Title + } + return `<a href="/publications/view/${pub.Id}" ` + `target="_blank" ` + `title="Link to view publication details">` + `${title}</a>`; } }, { + searchable: true, data: (pub) => { - authors = pub.Authors.split(",").map( - (item) => {return item.trim();}); - if(authors.length > 1) { - return authors[0] + ", et. al."; - } - return authors[0]; + authors = pub.Authors.split(",").map( + (item) => {return item.trim();}); + if(authors.length > 1) { + return authors[0] + ", et. al."; + } + return authors[0]; } } ], { + serverSide: true, ajax: { url: "/publications/list", dataSrc: "publications" }, select: "single", + paging: true, scrollY: 700, - paging: false, deferRender: true, + scroller: true, layout: { topStart: "info", topEnd: "search" diff --git a/uploader/templates/phenotypes/create-dataset.html b/uploader/templates/phenotypes/create-dataset.html index 8e45491..19a2b34 100644 --- a/uploader/templates/phenotypes/create-dataset.html +++ b/uploader/templates/phenotypes/create-dataset.html @@ -42,7 +42,7 @@ <input type="text" name="dataset-name" id="txt-dataset-name" - value="{{original_formdata.get('dataset-name') or (population.InbredSetCode + 'Publish')}}" + value="{{original_formdata.get('dataset-name') or (population.Name + 'Publish')}}" {%if errors["dataset-name"] is defined%} class="form-control danger" {%else%} @@ -51,7 +51,7 @@ required="required" /> <small class="form-text text-muted"> <p>A short representative name for the dataset.</p> - <p>Recommended: Use the population code and append "Publish" at the end. + <p>Recommended: Use the population name and append "Publish" at the end. <br />This field will only accept names composed of letters ('A-Za-z'), numbers (0-9), hyphens and underscores.</p> </small> @@ -86,7 +86,7 @@ name="dataset-shortname" type="text" class="form-control" - value="{{original_formdata.get('dataset-shortname') or (population.InbredSetCode + ' Publish')}}" /> + value="{{original_formdata.get('dataset-shortname') or (population.Name + 'Publish')}}" /> <small class="form-text text-muted"> <p>An optional, short name for the dataset. <br /> If this is not provided, it will default to the value provided for the diff --git a/uploader/templates/phenotypes/load-phenotypes-success.html b/uploader/templates/phenotypes/load-phenotypes-success.html new file mode 100644 index 0000000..3baca5b --- /dev/null +++ b/uploader/templates/phenotypes/load-phenotypes-success.html @@ -0,0 +1,42 @@ +{%extends "phenotypes/base.html"%} +{%from "flash_messages.html" import flash_all_messages%} +{%from "macro-table-pagination.html" import table_pagination%} +{%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%} + +{%block title%}Phenotypes{%endblock%} + +{%block pagetitle%}Phenotypes{%endblock%} + +{%block lvl4_breadcrumbs%} +<li {%if activelink=="load-phenotypes-success"%} + class="breadcrumb-item active" + {%else%} + class="breadcrumb-item" + {%endif%}> + <a href="{{url_for('species.populations.phenotypes.add_phenotypes', + species_id=species.SpeciesId, + population_id=population.Id, + dataset_id=dataset.Id)}}">Add Phenotypes</a> +</li> +{%endblock%} + +{%block contents%} +<div class="row"> + <p>You have successfully loaded + <!-- maybe indicate the number of phenotypes here? -->your + new phenotypes into the database.</p> + <!-- TODO: Maybe notify user that they have sole access. --> + <!-- TODO: Maybe provide a link to go to GeneNetwork to view the data. --> + <p>View your data + <a href="{{gn2_server_url}}search?species={{species.Name}}&group={{population.Name}}&type=Phenotypes&dataset={{dataset.Name}}&search_terms_or=*%0D%0A&search_terms_and=*%0D%0A&accession_id=None&FormID=searchResult" + target="_blank">on GeneNetwork2</a>. + You might need to login to GeneNetwork2 to view specific traits.</p> +</div> +{%endblock%} + +{%block sidebarcontents%} +{{display_pheno_dataset_card(species, population, dataset)}} +{%endblock%} + + +{%block more_javascript%}{%endblock%} |