diff options
Diffstat (limited to 'uploader/templates/phenotypes')
8 files changed, 313 insertions, 346 deletions
diff --git a/uploader/templates/phenotypes/add-phenotypes-base.html b/uploader/templates/phenotypes/add-phenotypes-base.html index 01cd0fe..9909c20 100644 --- a/uploader/templates/phenotypes/add-phenotypes-base.html +++ b/uploader/templates/phenotypes/add-phenotypes-base.html @@ -139,6 +139,7 @@ scrollY: 700, deferRender: true, scroller: true, + scrollCollapse: true, layout: { topStart: "info", topEnd: "search" diff --git a/uploader/templates/phenotypes/add-phenotypes-raw-files.html b/uploader/templates/phenotypes/add-phenotypes-raw-files.html index 697c7ad..67b56e3 100644 --- a/uploader/templates/phenotypes/add-phenotypes-raw-files.html +++ b/uploader/templates/phenotypes/add-phenotypes-raw-files.html @@ -105,115 +105,213 @@ </div> </fieldset> -<fieldset id="fldset-data-files"> +<fieldset id="fldset-files"> <legend>Data File(s)</legend> - <div class="form-group non-resumable-elements"> - <label for="finput-phenotype-descriptions" class="form-label"> - Phenotype Descriptions</label> - <input id="finput-phenotype-descriptions" - name="phenotype-descriptions" - class="form-control" - type="file" - data-preview-table="tbl-preview-pheno-desc" - required="required" /> - <span class="form-text text-muted"> - Provide a file that contains only the phenotype descriptions, - <a href="#docs-file-phenotype-description" - title="Documentation of the phenotype data file format."> - the documentation for the expected format of the file</a>.</span> - </div> - - {{display_resumable_elements( - "resumable-phenotype-descriptions", - "phenotype descriptions", - '<p>You can drop a CSV file that contains the phenotype descriptions here, - or you can click the "Browse" button (below and to the right) to select it - from your computer.</p> - <p>The CSV file must conform to some standards, as documented in the - <a href="#docs-file-phenotype-description" - title="Documentation of the phenotype data file format."> - "Phenotypes Descriptions" documentation</a> section below.</p>')}} - {{display_preview_table("tbl-preview-pheno-desc", "phenotype descriptions")}} - - - <div class="form-group non-resumable-elements"> - <label for="finput-phenotype-data" class="form-label">Phenotype Data</label> - <input id="finput-phenotype-data" - name="phenotype-data" - class="form-control" - type="file" - data-preview-table="tbl-preview-pheno-data" - required="required" /> - <span class="form-text text-muted"> - Provide a file that contains only the phenotype data. See - <a href="#docs-file-phenotype-data" - title="Documentation of the phenotype data file format."> - the documentation for the expected format of the file</a>.</span> - </div> - - {{display_resumable_elements( - "resumable-phenotype-data", - "phenotype data", - '<p>You can drop a CSV file that contains the phenotype data here, - or you can click the "Browse" button (below and to the right) to select it - from your computer.</p> - <p>The CSV file must conform to some standards, as documented in the - <a href="#docs-file-phenotype-data" - title="Documentation of the phenotype data file format."> - "Phenotypes Data" documentation</a> section below.</p>')}} - {{display_preview_table("tbl-preview-pheno-data", "phenotype data")}} - - {%if population.Family in families_with_se_and_n%} - <div class="form-group non-resumable-elements"> - <label for="finput-phenotype-se" class="form-label">Phenotype: Standard Errors</label> - <input id="finput-phenotype-se" - name="phenotype-se" - class="form-control" - type="file" - data-preview-table="tbl-preview-pheno-se" - required="required" /> - <span class="form-text text-muted"> - Provide a file that contains only the standard errors for the phenotypes, - computed from the data above.</span> - </div> - {{display_resumable_elements( - "resumable-phenotype-se", - "standard errors", - '<p>You can drop a CSV file that contains the computed standard-errors data - here, or you can click the "Browse" button (below and to the right) to - select it from your computer.</p> - <p>The CSV file must conform to some standards, as documented in the - <a href="#docs-file-phenotype-se" - title="Documentation of the phenotype data file format."> - "Phenotypes Data" documentation</a> section below.</p>')}} - {{display_preview_table("tbl-preview-pheno-se", "standard errors")}} + <fieldset id="fldset-descriptions-file"> + <div class="form-group"> + <div class="form-check"> + <input id="chk-phenotype-descriptions-transposed" + name="phenotype-descriptions-transposed" + type="checkbox" + class="form-check-input" + style="border: solid #8EABF0" /> + <label for="chk-phenotype-descriptions-transposed" + class="form-check-label"> + Description file transposed?</label> + </div> + + <div class="non-resumable-elements"> + <label for="finput-phenotype-descriptions" class="form-label"> + Phenotype Descriptions</label> + <input id="finput-phenotype-descriptions" + name="phenotype-descriptions" + class="form-control" + type="file" + data-preview-table="tbl-preview-pheno-desc" + required="required" /> + <span class="form-text text-muted"> + Provide a file that contains only the phenotype descriptions, + <a href="#docs-file-phenotype-description" + title="Documentation of the phenotype data file format."> + the documentation for the expected format of the file</a>.</span> + </div> + {{display_resumable_elements( + "resumable-phenotype-descriptions", + "phenotype descriptions", + '<p>Drag and drop the CSV file that contains the descriptions of your + phenotypes here.</p> + + <p>The CSV file should be a matrix of + <strong>phenotypes × descriptions</strong> i.e. The first column + contains the phenotype names/identifiers whereas the first row is a list + of metadata fields like, "description", "units", etc.</p> + + <p>If the format is transposed (i.e. + <strong>descriptions × phenotypes</strong>) select the checkbox above. + </p> + + <p>Please see the + <a href="#docs-file-phenotype-description" + title="Documentation of the phenotype data file format."> + "Phenotypes Descriptions" documentation</a> section below for more + information on the expected format of the file provided here.</p>')}} + {{display_preview_table( + "tbl-preview-pheno-desc", "phenotype descriptions")}} + </div> + </fieldset> + + + <fieldset id="fldset-data-file"> + <div class="form-group"> + <div class="form-check"> + <input id="chk-phenotype-data-transposed" + name="phenotype-data-transposed" + type="checkbox" + class="form-check-input" + style="border: solid #8EABF0" /> + <label for="chk-phenotype-data-transposed" class="form-check-label"> + Data file transposed?</label> + </div> + + <div class="non-resumable-elements"> + <label for="finput-phenotype-data" class="form-label">Phenotype Data</label> + <input id="finput-phenotype-data" + name="phenotype-data" + class="form-control" + type="file" + data-preview-table="tbl-preview-pheno-data" + required="required" /> + <span class="form-text text-muted"> + Provide a file that contains only the phenotype data. See + <a href="#docs-file-phenotype-data" + title="Documentation of the phenotype data file format."> + the documentation for the expected format of the file</a>.</span> + </div> + + {{display_resumable_elements( + "resumable-phenotype-data", + "phenotype data", + '<p>Drag and drop a CSV file that contains the phenotypes numerical data + here. You can click the "Browse" button (below and to the right) to + select the file from your computer.</p> + + <p>The CSV should be a matrix of <strong>samples × phenotypes</strong>, + i.e. The first column contains the samples identifiers while the first + row is the list of phenotypes identifiers occurring in the phenotypes + descriptions file.</p> + + <p>If the format is transposed (i.e <strong>phenotypes × samples</strong>) + select the checkbox above.</p> + <p>Please see the + <a href="#docs-file-phenotype-data" + title="Documentation of the phenotype data file format."> + "Phenotypes Data" documentation</a> section below for more information + on the expected format for the file provided here.</p>')}} + {{display_preview_table("tbl-preview-pheno-data", "phenotype data")}} + </div> + </fieldset> - <div class="form-group non-resumable-elements"> - <label for="finput-phenotype-n" class="form-label">Phenotype: Number of Samples/Individuals</label> - <input id="finput-phenotype-n" - name="phenotype-n" - class="form-control" - type="file" - data-preview-table="tbl-preview-pheno-n" - required="required" /> - <span class="form-text text-muted"> - Provide a file that contains only the number of samples/individuals used in - the computation of the standard errors above.</span> - </div> - {{display_resumable_elements( - "resumable-phenotype-n", - "number of samples/individuals", - '<p>You can drop a CSV file that contains the number of samples/individuals - used in computation of the standard-errors here, or you can click the - "Browse" button (below and to the right) to select it from your computer. - </p> - <p>The CSV file must conform to some standards, as documented in the - <a href="#docs-file-phenotype-n" - title="Documentation of the phenotype data file format."> - "Phenotypes Data" documentation</a> section below.</p>')}} - {{display_preview_table("tbl-preview-pheno-n", "number of samples/individuals")}} + {%if population.Family in families_with_se_and_n%} + <fieldset id="fldset-se-file"> + <div class="form-group"> + <div class="form-check"> + <input id="chk-phenotype-se-transposed" + name="phenotype-se-transposed" + type="checkbox" + class="form-check-input" + style="border: solid #8EABF0" /> + <label for="chk-phenotype-se-transposed" class="form-check-label"> + Standard-Errors file transposed?</label> + </div> + <div class="group non-resumable-elements"> + <label for="finput-phenotype-se" class="form-label">Phenotype: Standard Errors</label> + <input id="finput-phenotype-se" + name="phenotype-se" + class="form-control" + type="file" + data-preview-table="tbl-preview-pheno-se" + required="required" /> + <span class="form-text text-muted"> + Provide a file that contains only the standard errors for the phenotypes, + computed from the data above.</span> + </div> + + {{display_resumable_elements( + "resumable-phenotype-se", + "standard errors", + '<p>Drag and drop a CSV file that contains the phenotypes standard-errors + data here. You can click the "Browse" button (below and to the right) to + select the file from your computer.</p> + + <p>The CSV should be a matrix of <strong>samples × phenotypes</strong>, + i.e. The first column contains the samples identifiers while the first + row is the list of phenotypes identifiers occurring in the phenotypes + descriptions file.</p> + + <p>If the format is transposed (i.e <strong>phenotypes × samples</strong>) + select the checkbox above.</p> + + <p>Please see the + <a href="#docs-file-phenotype-se" + title="Documentation of the phenotype data file format."> + "Phenotypes Data" documentation</a> section below for more information + on the expected format of the file provided here.</p>')}} + + {{display_preview_table("tbl-preview-pheno-se", "standard errors")}} + </div> + </fieldset> + + + <fieldset id="fldset-n-file"> + <div class="form-group"> + <div class="form-check"> + <input id="chk-phenotype-n-transposed" + name="phenotype-n-transposed" + type="checkbox" + class="form-check-input" + style="border: solid #8EABF0" /> + <label for="chk-phenotype-n-transposed" class="form-check-label"> + Counts file transposed?</label> + </div> + <div class="non-resumable-elements"> + <label for="finput-phenotype-n" class="form-label">Phenotype: Number of Samples/Individuals</label> + <input id="finput-phenotype-n" + name="phenotype-n" + class="form-control" + type="file" + data-preview-table="tbl-preview-pheno-n" + required="required" /> + <span class="form-text text-muted"> + Provide a file that contains only the number of samples/individuals used in + the computation of the standard errors above.</span> + </div> + + {{display_resumable_elements( + "resumable-phenotype-n", + "number of samples/individuals", + '<p>Drag and drop a CSV file that contains the samples\' phenotypes counts + data here. You can click the "Browse" button (below and to the right) to + select the file from your computer.</p> + + <p>The CSV should be a matrix of <strong>samples × phenotypes</strong>, + i.e. The first column contains the samples identifiers while the first + row is the list of phenotypes identifiers occurring in the phenotypes + descriptions file.</p> + + <p>If the format is transposed (i.e <strong>phenotypes × samples</strong>) + select the checkbox above.</p> + + <p>Please see the + <a href="#docs-file-phenotype-se" + title="Documentation of the phenotype data file format."> + "Phenotypes Data" documentation</a> section below for more information + on the expected format of the file provided here.</p>')}} + + {{display_preview_table("tbl-preview-pheno-n", "number of samples/individuals")}} + </div> + </fieldset> </fieldset> {%endif%} {%endblock%} diff --git a/uploader/templates/phenotypes/edit-phenotype.html b/uploader/templates/phenotypes/edit-phenotype.html index 32c903f..115d6af 100644 --- a/uploader/templates/phenotypes/edit-phenotype.html +++ b/uploader/templates/phenotypes/edit-phenotype.html @@ -201,130 +201,6 @@ </form> </div> - -<div class="row"> - <h3 class="subheading">publication information</h3> - <p>Use the form below to update the publication information for this - phenotype.</p> - <form id="frm-edit-phenotype-pub-data" - class="form-horizontal" - method="POST" - action="#"> - <div class="form-group"> - <label for="txt-pubmed-id" class="control-label col-sm-2">Pubmed ID</label> - <div class="col-sm-10"> - <input id="txt-pubmed-id" name="pubmed-id" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter your publication's PubMed ID.</span> - </div> - </div> - - <div class="form-group"> - <label for="txt-publication-authors" class="control-label col-sm-2">Authors</label> - <div class="col-sm-10"> - <input id="txt-publication-authors" name="publication-authors" - type="text" class="form-control" /> - <span class="form-text text-muted"> - Enter the authors.</span> - </div> - </div> - - <div class="form-group"> - <label for="txt-publication-title" class="control-label col-sm-2"> - Publication Title</label> - <div class="col-sm-10"> - <input id="txt-publication-title" name="publication-title" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter your publication's title.</span> - </div> - </div> - - <div class="form-group"> - <label for="txt-publication-abstract" class="control-label col-sm-2"> - Publication Abstract</label> - <div class="col-sm-10"> - <textarea id="txt-publication-abstract" name="publication-abstract" - class="form-control" rows="10"></textarea> - <span class="form-text text-muted"> - Enter the abstract for your publication.</span> - </div> - </div> - - <div class="form-group"> - <label for="txt-publication-journal" class="control-label col-sm-2">Journal</label> - <div class="col-sm-10"> - <input id="txt-publication-journal" name="journal" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter the name of the journal where your work was published.</span> - </div> - </div> - - <div class="form-group"> - <label for="txt-publication-volume" class="control-label col-sm-2">Volume</label> - <div class="col-sm-10"> - <input id="txt-publication-volume" name="publication-volume" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter the volume in the following format …</span> - </div> - </div> - - <div class="form-group"> - <label for="txt-publication-pages" class="control-label col-sm-2">Pages</label> - <div class="col-sm-10"> - <input id="txt-publication-pages" name="publication-pages" type="text" - class="form-control" /> - <span class="form-text text-muted"> - Enter the journal volume where your work was published.</span> - </div> - </div> - - <div class="form-group"> - <label for="select-publication-month" class="control-label col-sm-2"> - Publication Month</label> - <div class="col-sm-10"> - <select id="select-publication-month" name="publication-month" - class="form-control"> - {%for month in monthnames%} - <option value="{{month | lower}}" - {%if current_month | lower == month | lower%} - selected="selected" - {%endif%}>{{month | capitalize}}</option> - {%endfor%} - </select> - <span class="form-text text-muted"> - Select the month when the work was published. - <span class="text-danger"> - This cannot be before, say 1600 and cannot be in the future!</span></span> - </div> - </div> - - <div class="form-group"> - <label for="txt-publication-year" class="control-label col-sm-2">Publication Year</label> - <div class="col-sm-10"> - <input id="txt-publication-year" name="publication-year" type="text" - class="form-control" value="{{current_year}}" /> - <span class="form-text text-muted"> - Enter the year your work was published. - <span class="text-danger"> - This cannot be before, say 1600 and cannot be in the future!</span> - </span> - </div> - </div> - <div class="form-group"> - <div class="col-sm-offset-2 col-sm-10"> - <input type="submit" - name="submit" - class="btn btn-primary not-implemented" - value="update publication" /> - </div> - </div> - </form> -</div> - {%endblock%} {%block sidebarcontents%} diff --git a/uploader/templates/phenotypes/job-status.html b/uploader/templates/phenotypes/job-status.html index 12963c1..257f726 100644 --- a/uploader/templates/phenotypes/job-status.html +++ b/uploader/templates/phenotypes/job-status.html @@ -105,7 +105,7 @@ <td>{{error.filename}}</td> <td>{{error.rowtitle}}</td> <td>{{error.coltitle}}</td> - <td>{%if error.cellvalue | length > 25%} + <td>{%if error.cellvalue is not none and error.cellvalue | length > 25%} {{error.cellvalue[0:24]}}… {%else%} {{error.cellvalue}} diff --git a/uploader/templates/phenotypes/load-phenotypes-success.html b/uploader/templates/phenotypes/load-phenotypes-success.html index 3baca5b..645be16 100644 --- a/uploader/templates/phenotypes/load-phenotypes-success.html +++ b/uploader/templates/phenotypes/load-phenotypes-success.html @@ -28,7 +28,7 @@ <!-- TODO: Maybe notify user that they have sole access. --> <!-- TODO: Maybe provide a link to go to GeneNetwork to view the data. --> <p>View your data - <a href="{{gn2_server_url}}search?species={{species.Name}}&group={{population.Name}}&type=Phenotypes&dataset={{dataset.Name}}&search_terms_or=*%0D%0A&search_terms_and=*%0D%0A&accession_id=None&FormID=searchResult" + <a href="{{search_page_uri}}" target="_blank">on GeneNetwork2</a>. You might need to login to GeneNetwork2 to view specific traits.</p> </div> diff --git a/uploader/templates/phenotypes/review-job-data.html b/uploader/templates/phenotypes/review-job-data.html index 1343c19..859df74 100644 --- a/uploader/templates/phenotypes/review-job-data.html +++ b/uploader/templates/phenotypes/review-job-data.html @@ -35,6 +35,9 @@ {%if job%} <div class="row"> <h3 class="heading">Data Review</h3> + <p class="text-info"><strong> + The data has <em>NOT</em> been added/saved yet. Review the details below + and click "Continue" to save the data.</strong></p> <p>The “<strong>{{dataset.FullName}}</strong>” dataset from the “<strong>{{population.FullName}}</strong>” population of the species “<strong>{{species.SpeciesName}} ({{species.FullName}})</strong>” diff --git a/uploader/templates/phenotypes/view-dataset.html b/uploader/templates/phenotypes/view-dataset.html index 21563d6..c634a48 100644 --- a/uploader/templates/phenotypes/view-dataset.html +++ b/uploader/templates/phenotypes/view-dataset.html @@ -46,12 +46,50 @@ </div> <div class="row"> - <p><a href="{{url_for('species.populations.phenotypes.add_phenotypes', - species_id=species.SpeciesId, - population_id=population.Id, - dataset_id=dataset.Id)}}" - title="Add a bunch of phenotypes" - class="btn btn-primary">Add phenotypes</a></p> + <div class="col"> + <a href="{{url_for('species.populations.phenotypes.add_phenotypes', + species_id=species.SpeciesId, + population_id=population.Id, + dataset_id=dataset.Id)}}" + title="Add a bunch of phenotypes" + class="btn btn-primary">Add phenotypes</a> + </div> + + <div class="col"> + <form id="frm-recompute-phenotype-means" + method="POST" + action="{{url_for( + 'species.populations.phenotypes.recompute_means', + species_id=species['SpeciesId'], + population_id=population['Id'], + dataset_id=dataset['Id'])}}" + class="d-flex flex-row align-items-center flex-wrap" + style="display: inline;"> + <input type="submit" + title="Compute/Recompute the means for all phenotypes." + class="btn btn-info" + value="(rec/c)ompute means" + id="submit-frm-recompute-phenotype-means" /> + </form> + </div> + + <div class="col"> + <form id="frm-run-qtlreaper" + method="POST" + action="{{url_for( + 'species.populations.phenotypes.rerun_qtlreaper', + species_id=species['SpeciesId'], + population_id=population['Id'], + dataset_id=dataset['Id'])}}" + class="d-flex flex-row align-items-center flex-wrap" + style="display: inline;"> + <input type="submit" + title="Run/Rerun QTLReaper." + class="btn btn-info" + value="(re)run QTLReaper" + id="submit-frm-rerun-qtlreaper" /> + </form> + </div> </div> <div class="row"> @@ -133,100 +171,6 @@ { select: "multi+shift", layout: { - top2: { - buttons: [ - { - extend: "selectAll", - className: "btn btn-info", - titleAttr: "Click to select ALL records in the table." - }, - { - extend: "selectNone", - className: "btn btn-info", - titleAttr: "Click to deselect ANY selected record(s) in the table." - }, - { - text: "Bulk Edit (Download Data)", - className: "btn btn-info btn-bulk-edit", - titleAttr: "Click to download data for editing.", - action: (event, dt, node, config) => { - var phenoids = []; - var selected = dt.rows({selected: true, page: "all"}).data(); - for(var idx = 0; idx < selected.length; idx++) { - phenoids.push({ - phenotype_id: selected[idx].Id, - xref_id: selected[idx].xref_id - }); - } - if(phenoids.length == 0) { - alert("No record selected. Nothing to do!"); - return false; - } - - $(".btn-bulk-edit").prop("disabled", true); - $(".btn-bulk-edit").addClass("d-none"); - var spinner = $( - "<div id='bulk-edit-spinner' class='spinner-grow text-info'>"); - spinner_content = $( - "<span class='visually-hidden'>"); - spinner_content.html( - "Downloading data …"); - spinner.append(spinner_content) - $(".btn-bulk-edit").parent().append( - spinner); - - $.ajax( - (`/species/${species_id}/populations/` + - `${population_id}/phenotypes/datasets/` + - `${dataset_id}/edit-download`), - { - method: "POST", - data: JSON.stringify(phenoids), - xhrFields: { - responseType: "blob" - }, - success: (data, textStatus, jqXHR) => { - var link = document.createElement("a"); - uri = window.URL.createObjectURL(data); - link.href = uri; - link.download = `${dataset_name}_data.tsv`; - - document.body.appendChild(link); - link.click(); - window.URL.revokeObjectURL(uri); - link.remove(); - }, - error: (jQXHR, textStatus, errorThrown) => { - console.log("Experienced an error: ", textStatus); - console.log("The ERROR: ", errorThrown); - }, - complete: (jqXHR, textStatus) => { - $("#bulk-edit-spinner").remove(); - $(".btn-bulk-edit").removeClass( - "d-none"); - $(".btn-bulk-edit").prop( - "disabled", false); - }, - contentType: "application/json" - }); - } - }, - { - text: "Bulk Edit (Upload Data)", - className: "btn btn-info btn-bulk-edit", - titleAttr: "Click to upload edited data you got by clicking the `Bulk Edit (Download Data)` button.", - action: (event, dt, node, config) => { - window.location.assign( - `${window.location.protocol}//` + - `${window.location.host}` + - `/species/${species_id}` + - `/populations/${population_id}` + - `/phenotypes/datasets/${dataset_id}` + - `/edit-upload`) - } - } - ] - }, top1Start: { pageLength: { text: "Show _MENU_ of _TOTAL_" @@ -239,6 +183,27 @@ return `${pheno.InbredSetCode}_${pheno.xref_id}`; } }); + + + $("#submit-frm-rerun-qtlreaper").on( + "click", + function(event) { + // (Re)run the QTLReaper script for selected phenotypes. + event.preventDefault(); + var form = $("#frm-run-qtlreaper"); + form.find(".dynamically-added-element").remove(); + dtPhenotypesList.rows({selected: true}).nodes().each((node, index) => { + _cloned = $(node).find(".chk-row-select").clone(); + _cloned.removeAttr("id"); + _cloned.removeAttr("class"); + _cloned.attr("style", "display: none;"); + _cloned.attr("data-type", "dynamically-added-element"); + _cloned.attr("class", "dynamically-added-element checkbox"); + _cloned.prop("checked", true); + form.append(_cloned); + }); + form.submit(); + }); }); </script> {%endblock%} diff --git a/uploader/templates/phenotypes/view-phenotype.html b/uploader/templates/phenotypes/view-phenotype.html index 21ac501..75e3c1e 100644 --- a/uploader/templates/phenotypes/view-phenotype.html +++ b/uploader/templates/phenotypes/view-phenotype.html @@ -24,8 +24,10 @@ {{flash_all_messages()}} <div class="row"> - <div class="panel panel-default"> - <div class="panel-heading"><strong>Basic Phenotype Details</strong></div> + <div class="card"> + <div class="card-header"> + <h5 class="card-title">Basic Phenotype Details</h5> + </div> <table class="table"> <tbody> @@ -41,24 +43,46 @@ <td><strong>Units</strong></td> <td>{{phenotype.Units}}</td> </tr> - {%for key,value in publish_data.items()%} - <tr> - <td><strong>{{key}}</strong></td> - <td>{{value}}</td> - </tr> - {%else%} - <tr> - <td colspan="2" class="text-muted"> - <span class="glyphicon glyphicon-exclamation-sign"></span> - No publication data found. - </td> - </tr> - {%endfor%} </tbody> </table> </div> </div> +<div class="row" style="margin-top:5px;"> + <div class="card"> + <div class="card-header"> + <h5 class="card-title">Publication Details</h5> + </div> + + <div class="card-body"> + <table class="table"> + <tbody> + <tr> + {%for key in ("PubMed_ID", "Authors", "Title", "Journal"):%} + <tr> + <td><strong>{{key}}</strong></td> + <td>{{publication.get(key, "")}}</td> + </tr> + {%else%} + <tr> + <td colspan="2" class="text-muted"> + <span class="glyphicon glyphicon-exclamation-sign"></span> + No publication data found. + </td> + </tr> + {%endfor%} + </tr> + </tbody> + </table> + <div style="text-align: right;"> + <a href="{{url_for('publications.edit_publication', publication_id=publication.Id, next=next)}}" + class="btn btn-info">edit</a> + <a href="#" class="btn btn-danger not-implemented">change</a> + </div> + </div> + </div> +</div> + {%if "group:resource:edit-resource" in privileges or "group:resource:delete-resource" in privileges%} <div class="row"> |