aboutsummaryrefslogtreecommitdiff
path: root/uploader/templates/genotypes/list-markers.html
diff options
context:
space:
mode:
Diffstat (limited to 'uploader/templates/genotypes/list-markers.html')
-rw-r--r--uploader/templates/genotypes/list-markers.html102
1 files changed, 102 insertions, 0 deletions
diff --git a/uploader/templates/genotypes/list-markers.html b/uploader/templates/genotypes/list-markers.html
new file mode 100644
index 0000000..9198b44
--- /dev/null
+++ b/uploader/templates/genotypes/list-markers.html
@@ -0,0 +1,102 @@
+{%extends "genotypes/base.html"%}
+{%from "flash_messages.html" import flash_all_messages%}
+{%from "species/macro-display-species-card.html" import display_species_card%}
+
+{%block title%}Genotypes: List Markers{%endblock%}
+
+{%block pagetitle%}Genotypes: List Markers{%endblock%}
+
+{%block lvl4_breadcrumbs%}
+<li {%if activelink=="list-markers"%}
+ class="breadcrumb-item active"
+ {%else%}
+ class="breadcrumb-item"
+ {%endif%}>
+ <a href="{{url_for('species.populations.genotypes.list_markers',
+ species_id=species.SpeciesId)}}">List markers</a>
+</li>
+{%endblock%}
+
+{%block contents%}
+{{flash_all_messages()}}
+
+{%if markers | length > 0%}
+<div class="row">
+ <p>
+ There are a total of {{total_markers}} genotype markers for this species.
+ </p>
+ <div class="row">
+ <div class="col-md-2" style="text-align: start;">
+ {%if start_from > 0%}
+ <a href="{{url_for('species.populations.genotypes.list_markers',
+ species_id=species.SpeciesId,
+ start_from=start_from-count,
+ count=count)}}">
+ <span class="glyphicon glyphicon-backward"></span>
+ Previous
+ </a>
+ {%endif%}
+ </div>
+ <div class="col-md-8" style="text-align: center;">
+ Displaying markers {{start_from+1}} to {{start_from+count if start_from+count < total_markers else total_markers}} of
+ {{total_markers}}
+ </div>
+ <div class="col-md-2" style="text-align: end;">
+ {%if start_from + count < total_markers%}
+ <a href="{{url_for('species.populations.genotypes.list_markers',
+ species_id=species.SpeciesId,
+ start_from=start_from+count,
+ count=count)}}">
+ Next
+ <span class="glyphicon glyphicon-forward"></span>
+ </a>
+ {%endif%}
+ </div>
+ </div>
+ <table class="table">
+ <thead>
+ <tr>
+ <th title="">#</th>
+ <th title="">Marker Name</th>
+ <th title="Chromosome">Chr</th>
+ <th title="Physical location of the marker in megabasepairs">
+ Location (Mb)</th>
+ <th title="">Source</th>
+ <th title="">Source2</th>
+ </thead>
+
+ <tbody>
+ {%for marker in markers%}
+ <tr>
+ <td>{{marker.sequence_number}}</td>
+ <td>{{marker.Marker_Name}}</td>
+ <td>{{marker.Chr}}</td>
+ <td>{{marker.Mb}}</td>
+ <td>{{marker.Source}}</td>
+ <td>{{marker.Source2}}</td>
+ </tr>
+ {%endfor%}
+ </tbody>
+ </table>
+</div>
+{%else%}
+<div class="row">
+ <p class="text-warning">
+ <span class="glyphicon glyphicon-exclamation-sign"></span>
+ This species does not currently have any genetic markers uploaded, therefore,
+ there is nothing to display here.
+ </p>
+ <p>
+ <a href="#add-genetic-markers-for-species-{{species.SpeciesId}}"
+ title="Add genetic markers for this species"
+ class="btn btn-primary">
+ add genetic markers
+ </a>
+ </p>
+</div>
+{%endif%}
+{%endblock%}
+
+{%block sidebarcontents%}
+{{display_species_card(species)}}
+{%endblock%}