diff options
Diffstat (limited to 'uploader/templates/base.html')
| -rw-r--r-- | uploader/templates/base.html | 154 |
1 files changed, 94 insertions, 60 deletions
diff --git a/uploader/templates/base.html b/uploader/templates/base.html index d68c6c0..5eca445 100644 --- a/uploader/templates/base.html +++ b/uploader/templates/base.html @@ -8,7 +8,7 @@ <meta name="viewport" content="width=device-width, initial-scale=1.0" /> {%block extrameta%}{%endblock%} - <title>GN Uploader: {%block title%}{%endblock%}</title> + <title>Data Upload and Quality Control: {%block title%}{%endblock%}</title> <link rel="stylesheet" type="text/css" href="{{url_for('base.bootstrap', @@ -17,78 +17,110 @@ href="{{url_for('base.bootstrap', filename='css/bootstrap-theme.min.css')}}" /> <link rel="stylesheet" type="text/css" href="/static/css/styles.css" /> + <link rel="stylesheet" + href="{{url_for('base.datatables', filename='css/jquery.dataTables.css')}}" /> {%block css%}{%endblock%} </head> <body> - <header id="header" class="container-fluid"> - <div class="row"> - <span class="header col-lg-9">GeneNetwork Data Quality Control and Upload</span> - <nav class="header-nav col-lg-3"> - <ul class="nav justify-content-end"> - <li class="btn"> - {%if user_logged_in()%} - <a href="{{url_for('oauth2.logout')}}" - title="Log out of the system">Log Out</a> - {%else%} - <a href="{{authserver_authorise_uri()}}" - title="Log in to the system">Log In</a> - {%endif%} - </li> - </ul> - </nav> + <header id="header"> + <span id="header-text">GeneNetwork</span> + <nav id="header-nav"> + <ul class="nav justify-content-end"> + <li> + {%if user_logged_in()%} + <a href="{{url_for('oauth2.logout')}}" + title="Log out of the system"> + <span class="glyphicon glyphicon-user"></span> + Sign Out</a> + {%else%} + <a href="{{authserver_authorise_uri()}}" + title="Log in to the system">Sign In</a> + {%endif%} + </li> + </ul> + </nav> </header> - <aside id="nav-sidebar" class="container-fluid"> + <aside id="nav-sidebar"> <ul class="nav flex-column"> - <li><a href="/" >Home</a></li> - <li><a href="{{url_for('species.list_species')}}" - title="View and manage species information.">Species</a></li> - <li><a href="#" - title="Upload Genotype data.">Genotype Data</a></li> - <li><a href="{{url_for('species.populations.index')}}" - title="View and manage species populations.">Populations</a></li> - <li><a href="{{url_for('species.populations.samples.index')}}" - title="Upload population samples.">Samples</a></li> - <li><a href="{{url_for('expression-data.index.index')}}" - title="Upload expression data.">Expression Data</a></li> - <li><a href="#" - title="Upload phenotype data.">Phenotype Data</a></li> - <li><a href="#" - title="Upload individual data.">Individual Data</a></li> - <li><a href="#" - title="Upload RNA-Seq data.">RNA-Seq Data</a></li> + <li {%if activemenu=="home"%}class="activemenu"{%endif%}> + <a href="/" >Home</a></li> + <li {%if activemenu=="species"%}class="activemenu"{%endif%}> + <a href="{{url_for('species.list_species')}}" + title="View and manage species information.">Species</a></li> + <li {%if activemenu=="platforms"%}class="activemenu"{%endif%}> + <a href="{{url_for('species.platforms.index')}}" + title="View and manage species platforms.">Sequencing Platforms</a></li> + <li {%if activemenu=="populations"%}class="activemenu"{%endif%}> + <a href="{{url_for('species.populations.index')}}" + title="View and manage species populations.">Populations</a></li> + <li {%if activemenu=="samples"%}class="activemenu"{%endif%}> + <a href="{{url_for('species.populations.samples.index')}}" + title="Upload population samples.">Samples</a></li> + <li {%if activemenu=="genotypes"%}class="activemenu"{%endif%}> + <a href="{{url_for('species.populations.genotypes.index')}}" + title="Upload Genotype data.">Genotype Data</a></li> + <!-- + TODO: Maybe include menus here for managing studies and dataset or + maybe have the studies/datasets managed under their respective + sections, e.g. "Publish*" studies/datasets under the "Phenotypes" + section, "ProbeSet*" studies/datasets under the "Expression Data" + sections, etc. + --> + <li {%if activemenu=="phenotypes"%}class="activemenu"{%endif%}> + <a href="{{url_for('species.populations.phenotypes.index')}}" + title="Upload phenotype data.">Phenotype Data</a></li> + <!-- + <li {%if activemenu=="expression-data"%}class="activemenu"{%endif%}> + <a href="{{url_for('species.populations.expression-data.index')}}" + title="Upload expression data." + class="not-implemented">Expression Data</a></li> + <li {%if activemenu=="individuals"%}class="activemenu"{%endif%}> + <a href="#" + class="not-implemented" + title="Upload individual data.">Individual Data</a></li> + <li {%if activemenu=="rna-seq"%}class="activemenu"{%endif%}> + <a href="#" + class="not-implemented" + title="Upload RNA-Seq data.">RNA-Seq Data</a></li> + <li {%if activemenu=="async-jobs"%}class="activemenu"{%endif%}> + <a href="#" + class="not-implemented" + title="View and manage the backgroud jobs you have running"> + Background Jobs</a></li> + --> </ul> </aside> - <main id="main" class="main container-fluid"> + <main id="main" class="main"> - <div class="pagetitle row"> - <h1>GN Uploader: {%block pagetitle%}{%endblock%}</h1> - <nav> - <ol class="breadcrumb"> - <li {%if activelink is not defined or activelink=="home"%} - class="breadcrumb-item active" - {%else%} - class="breadcrumb-item" - {%endif%}> - <a href="{{url_for('base.index')}}">Home</a> - </li> - {%block lvl1_breadcrumbs%}{%endblock%} - </ol> - </nav> + <div id="pagetitle" class="pagetitle"> + <span class="title">Data Upload and Quality Control: {%block pagetitle%}{%endblock%}</span> + <!-- + <nav> + <ol class="breadcrumb"> + <li {%if activelink is not defined or activelink=="home"%} + class="breadcrumb-item active" + {%else%} + class="breadcrumb-item" + {%endif%}> + <a href="{{url_for('base.index')}}">Home</a> + </li> + {%block lvl1_breadcrumbs%}{%endblock%} + </ol> + </nav> + --> </div> - <div class="row"> - <div class="container-fluid"> - <div class="col-md-8 main-content"> - {%block contents%}{%endblock%} - </div> - <div class="sidebar-content col-md-4"> - {%block sidebarcontents%}{%endblock%} - </div> + <div id="all-content"> + <div id="main-content"> + {%block contents%}{%endblock%} + </div> + <div id="sidebar-content"> + {%block sidebarcontents%}{%endblock%} </div> </div> </main> @@ -98,8 +130,10 @@ filename='jquery.min.js')}}"></script> <script src="{{url_for('base.bootstrap', filename='js/bootstrap.min.js')}}"></script> + <script type="text/javascript" src="/static/js/misc.js"></script> + <script type="text/javascript" + src="{{url_for('base.datatables', + filename='js/jquery.dataTables.js')}}"></script> {%block javascript%}{%endblock%} - </body> - </html> |