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-rw-r--r--uploader/static/css/layout-common.css3
-rw-r--r--uploader/static/css/layout-large.css62
-rw-r--r--uploader/static/css/layout-medium.css64
-rw-r--r--uploader/static/css/layout-small.css60
-rw-r--r--uploader/static/css/theme.css90
-rw-r--r--uploader/static/js/populations.js17
-rw-r--r--uploader/static/js/pubmed.js2
-rw-r--r--uploader/static/js/species.js16
-rw-r--r--uploader/static/js/upload_samples.js24
-rw-r--r--uploader/static/js/urls.js26
10 files changed, 349 insertions, 15 deletions
diff --git a/uploader/static/css/layout-common.css b/uploader/static/css/layout-common.css
new file mode 100644
index 0000000..36a5735
--- /dev/null
+++ b/uploader/static/css/layout-common.css
@@ -0,0 +1,3 @@
+* {
+    box-sizing: border-box;
+}
diff --git a/uploader/static/css/layout-large.css b/uploader/static/css/layout-large.css
new file mode 100644
index 0000000..8abd2dd
--- /dev/null
+++ b/uploader/static/css/layout-large.css
@@ -0,0 +1,62 @@
+@media screen and (min-width: 20.1in) {
+    body {
+        display: grid;
+        grid-template-columns: 7fr 3fr;
+        grid-gap: 1em;
+    }
+
+    #header {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 3;
+
+        /* Define layout for the children elements */
+        display: grid;
+        grid-template-columns: 8fr 2fr;
+    }
+
+    #header #header-text {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 2;
+
+        /* Content styling */
+        padding-left: 1em;
+    }
+
+    #header #header-nav {
+        /* Place it in the parent element */
+        grid-column-start: 2;
+        grid-column-end: 3;
+    }
+
+    #main {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 3;
+
+        /* Define layout for the children elements */
+        display: grid;
+        grid-template-columns: 7fr 3fr;
+        grid-gap: 1.5em;
+    }
+
+    #main #breadcrumbs {
+        grid-column-start: 1;
+        grid-column-end: 3;
+        padding: 0 3px;
+    }
+
+    #main #main-content {
+        max-width: 950px;
+
+        grid-column-start: 1;
+        grid-column-end: 2;
+    }
+
+    #main #sidebar-content {
+        grid-column-start: 2;
+        grid-column-end: 3;
+        padding: 1em 0 0 0;
+    }
+}
diff --git a/uploader/static/css/layout-medium.css b/uploader/static/css/layout-medium.css
new file mode 100644
index 0000000..2cca711
--- /dev/null
+++ b/uploader/static/css/layout-medium.css
@@ -0,0 +1,64 @@
+@media screen and (width > 8in) and (max-width: 20in) {
+    body {
+        display: grid;
+        grid-template-columns: 65fr 35fr;
+        grid-gap: 1em;
+    }
+
+    #header {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 3;
+
+        /* Define layout for the children elements */
+        display: grid;
+        grid-template-columns: 8fr 2fr;
+    }
+
+    #header #header-text {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 2;
+
+        /* Content styling */
+        padding-left: 1em;
+    }
+
+    #header #header-nav {
+        /* Place it in the parent element */
+        grid-column-start: 2;
+        grid-column-end: 3;
+    }
+
+    #main {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 3;
+
+        /* Define layout for the children elements */
+        display: grid;
+        grid-template-columns: 7fr 3fr;
+        grid-gap: 5px;
+    }
+
+    #main #breadcrumbs {
+        grid-column-start: 1;
+        grid-column-end: 3;
+        padding: 0 3px;
+    }
+
+    #main #main-content {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 2;
+        grid-gap: 5px;
+
+        /* Define layout for the children elements */
+        max-width: 100%;
+    }
+
+    #main #sidebar-content {
+        grid-column-start: 2;
+        grid-column-end: 3;
+    }
+}
diff --git a/uploader/static/css/layout-small.css b/uploader/static/css/layout-small.css
new file mode 100644
index 0000000..80a3759
--- /dev/null
+++ b/uploader/static/css/layout-small.css
@@ -0,0 +1,60 @@
+@media screen and (max-width: 8in) {
+    body {
+        display: grid;
+        grid-template-columns: 1fr;
+        grid-template-rows: 1fr 2fr 7fr;
+        grid-gap: 1em;
+    }
+
+    #header {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 3;
+
+        /* Define layout for the children elements */
+        display: grid;
+        grid-template-columns: 1fr;
+    }
+
+    #header #header-text {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 2;
+
+        /* Content styling */
+        padding-left: 1em;
+    }
+
+    #header #header-nav {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 2;
+    }
+
+    #main {
+        /* Place it in the parent element */
+        grid-column-start: 1;
+        grid-column-end: 2;
+        display: grid;
+
+        /* Define layout for the children elements */
+        grid-template-rows: 1.5em 80% 20%;
+        grid-template-columns: 1fr;
+    }
+
+    #main #breadcrumbs {
+        grid-row-start: 1;
+        grid-row-end: 2;
+        
+    }
+
+    #main #main-content {
+        grid-row-start: 2;
+        grid-row-end: 3;
+    }
+
+    #main #sidebar-content {
+        grid-row-start: 3;
+        grid-row-end: 4;
+    }
+}
diff --git a/uploader/static/css/theme.css b/uploader/static/css/theme.css
new file mode 100644
index 0000000..bdac745
--- /dev/null
+++ b/uploader/static/css/theme.css
@@ -0,0 +1,90 @@
+body {
+    margin: 0.7em;
+    font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
+    font-style: normal;
+    font-size: 20px;
+}
+
+#header {
+    background-color: #336699;
+    color: #FFFFFF;
+    border-radius: 3px;
+    min-height: 30px;
+}
+
+#header #header-nav .nav li a {
+    /* Content styling */
+    color: #FFFFFF;
+    background: #4477AA;
+    border: solid 5px #336699;
+    border-radius: 5px;
+    font-size: 0.7em;
+    text-align: center;
+    padding: 1px 7px;
+}
+
+#main #breadcrumbs {
+    border-radius:3px;
+    text-align: center;
+}
+
+#main #main-content {
+    border-radius: 5px;
+    padding: 0 5px;
+}
+
+#main #sidebar-content {
+    background: #EEEEEE;
+
+    border-radius: 5px;
+    padding: 10px 5px;
+}
+
+#main .row {
+    margin: 0 2px;
+}
+
+
+.heading {
+    border-bottom: solid #EEBB88;
+    text-transform: capitalize;
+}
+
+.subheading {
+    padding: 1em 0 0.1em 0.5em;
+    border-bottom: solid #88BBEE;
+    text-transform: capitalize;
+}
+
+label {
+    text-transform: Capitalize;
+}
+
+input[type="search"] {
+    border-radius: 5px;
+}
+
+.btn {
+    text-transform: Capitalize;
+}
+
+table.dataTable thead th, table.dataTable tfoot th{
+    border-right: 1px solid white;
+    color: white;
+    background-color: #369 !important;
+}
+
+table.dataTable tbody tr.selected td {
+    background-color: #ffee99 !important;
+}
+
+.form-group {
+    margin-bottom: 2em;
+    padding-bottom: 0.2em;
+    border-bottom: solid gray 1px;
+}
+
+
+.breadcrumb-item {
+    text-transform: Capitalize;
+}
diff --git a/uploader/static/js/populations.js b/uploader/static/js/populations.js
index be1231f..111ebb7 100644
--- a/uploader/static/js/populations.js
+++ b/uploader/static/js/populations.js
@@ -13,9 +13,24 @@ $(() => {
                 }
             },
             {
+                searchable: true,
                 data: (apopulation) => {
                     return `${apopulation.FullName} (${apopulation.InbredSetName})`;
                 }
             }
-        ]);
+        ],
+        {
+            select: "single",
+            paging: true,
+            scrollY: 500,
+            deferRender: true,
+            scroller: true,
+            scrollCollapse: true,
+            layout: {
+                topStart: "info",
+                topEnd: "search",
+                bottomStart: "pageLength",
+                bottomEnd: false
+            }
+        });
 });
diff --git a/uploader/static/js/pubmed.js b/uploader/static/js/pubmed.js
index 9afd4c3..f425f49 100644
--- a/uploader/static/js/pubmed.js
+++ b/uploader/static/js/pubmed.js
@@ -22,7 +22,7 @@ var extract_details = (pubmed_id, details) => {
         "journal": details[pubmed_id].fulljournalname,
         "volume": details[pubmed_id].volume,
         "pages": details[pubmed_id].pages,
-        "month": _date.length > 1 ? months[_date[1].toLowerCase()] : "jan",
+        "month": _date.length > 1 ? (months[_date[1].toLowerCase()] || "January") : "January",
         "year": _date[0],
     };
 };
diff --git a/uploader/static/js/species.js b/uploader/static/js/species.js
index 9ea3017..fb0d2d2 100644
--- a/uploader/static/js/species.js
+++ b/uploader/static/js/species.js
@@ -16,5 +16,19 @@ $(() => {
                     return `${aspecies.FullName} (${aspecies.SpeciesName})`;
                 }
             }
-        ]);
+        ],
+        {
+            select: "single",
+            paging: true,
+            scrollY: 500,
+            deferRender: true,
+            scroller: true,
+            scrollCollapse: true,
+            layout: {
+                topStart: "info",
+                topEnd: "search",
+                bottomStart: "pageLength",
+                bottomEnd: false
+            }
+        });
 });
diff --git a/uploader/static/js/upload_samples.js b/uploader/static/js/upload_samples.js
index aed536f..1c25a1d 100644
--- a/uploader/static/js/upload_samples.js
+++ b/uploader/static/js/upload_samples.js
@@ -87,20 +87,20 @@ function display_preview(event) {
     var data_preview_table = document.getElementById("tbl:samples-preview");
     remove_rows(data_preview_table);
 
-    var separator = document.getElementById("select:separator").value;
+    var separator = document.getElementById("select-separator").value;
     if(separator === "other") {
-	separator = document.getElementById("txt:separator").value;
+	separator = document.getElementById("txt-separator").value;
     }
     if(separator == "") {
 	display_error_row(data_preview_table, "Please provide a separator.");
 	return false;
     }
 
-    var delimiter = document.getElementById("txt:delimiter").value;
+    var delimiter = document.getElementById("txt-delimiter").value;
 
-    var firstlineheading = document.getElementById("chk:heading").checked;
+    var firstlineheading = document.getElementById("chk-heading").checked;
 
-    var fileelement = document.getElementById("file:samples");
+    var fileelement = document.getElementById("file-samples");
     var preview_data = JSON.parse(
 	fileelement.getAttribute("data-preview-content") || "[]");
     if(preview_data.length == 0) {
@@ -115,18 +115,18 @@ function display_preview(event) {
 	delimiter));
 }
 
-document.getElementById("chk:heading").addEventListener(
+document.getElementById("chk-heading").addEventListener(
     "change", display_preview);
-document.getElementById("select:separator").addEventListener(
+document.getElementById("select-separator").addEventListener(
     "change", display_preview);
-document.getElementById("txt:separator").addEventListener(
+document.getElementById("txt-separator").addEventListener(
     "keyup", display_preview);
-document.getElementById("txt:delimiter").addEventListener(
+document.getElementById("txt-delimiter").addEventListener(
     "keyup", display_preview);
-document.getElementById("file:samples").addEventListener(
+document.getElementById("file-samples").addEventListener(
     "change", (event) => {
 	read_first_n_lines(event,
-			   document.getElementById("file:samples"),
+			   document.getElementById("file-samples"),
 			   30,
-			   document.getElementById("chk:heading").checked);
+			   document.getElementById("chk-heading").checked);
     });
diff --git a/uploader/static/js/urls.js b/uploader/static/js/urls.js
new file mode 100644
index 0000000..e3fb7c6
--- /dev/null
+++ b/uploader/static/js/urls.js
@@ -0,0 +1,26 @@
+function baseURL() {
+    return new URL(`${window.location.protocol}//${window.location.host}`);
+};
+
+function buildURLFromCurrentURL(pathname, searchParams = new URLSearchParams()) {
+    var uri = baseURL();
+    uri.pathname=pathname;
+    var _search = new URLSearchParams(window.location.search);
+    searchParams.forEach(function(value, key) {
+        _search.set(key, value);
+    });
+    uri.search = _search.toString();
+    return uri
+};
+
+function deleteSearchParams(url, listOfParams = []) {
+    _params = new URLSearchParams(url.search);
+    listOfParams.forEach(function(paramName) {
+        _params.delete(paramName);
+    });
+
+    
+    newUrl = new URL(url.toString());
+    newUrl.search = _params.toString();
+    return newUrl;
+}
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-12-20 00:07:15 +0000