diff options
Diffstat (limited to 'uploader/phenotypes')
| -rw-r--r-- | uploader/phenotypes/models.py | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/uploader/phenotypes/models.py b/uploader/phenotypes/models.py index 4b8b223..deaf991 100644 --- a/uploader/phenotypes/models.py +++ b/uploader/phenotypes/models.py @@ -304,6 +304,23 @@ def phenotypes_data_by_ids( reduce(__organise_by_phenotype__, cursor.fetchall(), {}).values()) +def __pre_process_phenotype_data__(row): + _desc = row.get("description", "") + _pre_pub_desc = row.get("pre_publication_description", _desc) + _orig_desc = row.get("original_description", _desc) + _post_pub_desc = row.get("post_publication_description", _orig_desc) + _pre_pub_abbr = row.get("pre_publication_abbreviation", row["id"]) + _post_pub_abbr = row.get("post_publication_abbreviation", _pre_pub_abbr) + return { + "pre_publication_description": _pre_pub_desc, + "post_publication_description": _post_pub_desc, + "original_description": _orig_desc, + "units": row["units"], + "pre_publication_abbreviation": _pre_pub_abbr, + "post_publication_abbreviation": _post_pub_abbr + } + + def create_new_phenotypes(conn: mdb.Connection, phenotypes: Iterable[dict]) -> tuple[dict, ...]: """Add entirely new phenotypes to the database.""" |