diff options
Diffstat (limited to 'uploader/phenotypes/views.py')
| -rw-r--r-- | uploader/phenotypes/views.py | 15 |
1 files changed, 14 insertions, 1 deletions
diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index 23bc682..c03f3f5 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -317,6 +317,11 @@ def create_dataset(species: dict, population: dict, **kwargs):# pylint: disable= dataset_shortname = ( form["dataset-shortname"] or form["dataset-name"]).strip() _pheno_dataset = save_new_dataset( + # It's not necessary to update the authorisation server to register + # new phenotype resource here, since each phenotype trait can, in + # theory, have its own access control allowing/disallowing access to + # it. In practice, however, we tend to gather multiple traits into a + # single resource for access control. cursor, population["Id"], form["dataset-name"].strip(), @@ -662,6 +667,8 @@ def review_job_data( conn, int(_job_metadata["publicationid"])) if _job_metadata.get("publicationid") else None), + user=session.user_details(), + timestamp=datetime.datetime.now().isoformat(), activelink="add-phenotypes") @@ -741,9 +748,15 @@ def load_data_to_database( "publication_id": _meta["publicationid"], "authserver": oauth2client.authserver_uri(), "token": token["access_token"], + "dataname": request.form["data_name"].strip(), "success_handler": ( "uploader.phenotypes.views" - ".load_phenotypes_success_handler") + ".load_phenotypes_success_handler"), + **{ + key: request.form[key] + for key in ("data_description",) + if key in request.form.keys() + } }, external_id=session.logged_in_user_id()) ).then( |