diff options
Diffstat (limited to 'uploader/phenotypes/views.py')
| -rw-r--r-- | uploader/phenotypes/views.py | 14 |
1 files changed, 10 insertions, 4 deletions
diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index 430a3fb..9c737fc 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -3,6 +3,7 @@ import sys import csv import uuid import json +import logging import datetime import tempfile from typing import Any @@ -900,9 +901,9 @@ def edit_download_phenotype_data(# pylint: disable=[unused-argument] filename = Path(tmpdir).joinpath("tempfile.tsv") with open(filename, mode="w") as outfile: outfile.write( - "# **DO NOT** delete the 'UniqueIdentifier' field. It is used " - "by the system to identify and edit the correct row(s) in the " - "database.\n") + "# **DO NOT** delete the 'UniqueIdentifier' row. It is used " + "by the system to identify and edit the correct rows and " + "columns in the database.\n") outfile.write( "# The '…_description' fields are useful for you to figure out " "what row you are working on. Changing any of this fields will " @@ -972,8 +973,13 @@ def edit_upload_phenotype_data(# pylint: disable=[unused-argument] [ sys.executable, "-u", "-m", "scripts.phenotypes_bulk_edit", + app.config["SQL_URI"], jobs_db, - str(job_id) + str(job_id), + "--log-level", + logging.getLevelName( + app.logger.getEffectiveLevel() + ).lower() ], "phenotype-bulk-edit", extra_meta = { |