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-rw-r--r--uploader/phenotypes/models.py9
1 files changed, 5 insertions, 4 deletions
diff --git a/uploader/phenotypes/models.py b/uploader/phenotypes/models.py
index 9324601..73b1cce 100644
--- a/uploader/phenotypes/models.py
+++ b/uploader/phenotypes/models.py
@@ -5,8 +5,9 @@ from datetime import datetime
import MySQLdb as mdb
from MySQLdb.cursors import Cursor, DictCursor
+from flask import current_app as app
-from uploader.db_utils import debug_query
+from gn_libs.mysqldb import debug_query
def datasets_by_population(
conn: mdb.Connection,
@@ -68,7 +69,7 @@ def dataset_phenotypes(conn: mdb.Connection,
f" LIMIT {limit} OFFSET {offset}" if bool(limit) else "")
with conn.cursor(cursorclass=DictCursor) as cursor:
cursor.execute(_query, (population_id, dataset_id))
- debug_query(cursor)
+ debug_query(cursor, app.logger)
return tuple(dict(row) for row in cursor.fetchall())
@@ -201,7 +202,7 @@ def phenotypes_data(conn: mdb.Connection,
f" LIMIT {limit} OFFSET {offset}" if bool(limit) else "")
with conn.cursor(cursorclass=DictCursor) as cursor:
cursor.execute(_query, (population_id, dataset_id))
- debug_query(cursor)
+ debug_query(cursor, app.logger)
return tuple(dict(row) for row in cursor.fetchall())
@@ -228,5 +229,5 @@ def save_new_dataset(cursor: Cursor,
"%(created)s, %(public)s, %(population_id)s, %(confidentiality)s, "
"%(users)s)",
params)
- debug_query(cursor)
+ debug_query(cursor, app.logger)
return {**params, "Id": cursor.lastrowid}