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-rw-r--r--uploader/genotypes/views.py45
1 files changed, 20 insertions, 25 deletions
diff --git a/uploader/genotypes/views.py b/uploader/genotypes/views.py
index 0433420..54c2444 100644
--- a/uploader/genotypes/views.py
+++ b/uploader/genotypes/views.py
@@ -12,12 +12,12 @@ from flask import (flash,
 from uploader.ui import make_template_renderer
 from uploader.oauth2.client import oauth2_post
 from uploader.authorisation import require_login
+from uploader.route_utils import generic_select_population
+from uploader.datautils import safe_int, enumerate_sequence
 from uploader.species.models import all_species, species_by_id
 from uploader.monadic_requests import make_either_error_handler
 from uploader.request_checks import with_species, with_population
-from uploader.datautils import safe_int, order_by_family, enumerate_sequence
-from uploader.population.models import (populations_by_species,
-                                        population_by_species_and_id)
+from uploader.population.models import population_by_species_and_id
 
 from .models import (genotype_markers,
                      genotype_dataset,
@@ -35,8 +35,15 @@ def index():
     with database_connection(app.config["SQL_URI"]) as conn:
         if not bool(request.args.get("species_id")):
             return render_template("genotypes/index.html",
-                                   species=order_by_family(all_species(conn)),
+                                   species=all_species(conn),
                                    activelink="genotypes")
+
+        species_id = request.args.get("species_id")
+        if species_id == "CREATE-SPECIES":
+            return redirect(url_for(
+                "species.create_species",
+                return_to="species.populations.genotypes.select_population"))
+
         species = species_by_id(conn, request.args.get("species_id"))
         if not bool(species):
             flash(f"Could not find species with ID '{request.args.get('species_id')}'!",
@@ -50,28 +57,16 @@ def index():
                    methods=["GET"])
 @require_login
 @with_species(redirect_uri="species.populations.genotypes.index")
-def select_population(species: dict, species_id: int):
+def select_population(species: dict, species_id: int):# pylint: disable=[unused-argument]
     """Select the population under which the genotypes go."""
-    with database_connection(app.config["SQL_URI"]) as conn:
-        if not bool(request.args.get("population_id")):
-            return render_template("genotypes/select-population.html",
-                                   species=species,
-                                   populations=order_by_family(
-                                       populations_by_species(conn, species_id),
-                                       order_key="FamilyOrder"),
-                                   activelink="genotypes")
-
-        population = population_by_species_and_id(
-            conn, species_id, request.args.get("population_id"))
-        if not bool(population):
-            flash("Invalid population selected!", "alert-danger")
-            return redirect(url_for(
-                "species.populations.genotypes.select_population",
-                species_id=species_id))
-
-        return redirect(url_for("species.populations.genotypes.list_genotypes",
-                                species_id=species_id,
-                                population_id=population["Id"]))
+    return generic_select_population(
+        species,
+        "genotypes/select-population.html",
+        request.args.get("population_id") or "",
+        "species.populations.genotypes.select_population",
+        "species.populations.genotypes.list_genotypes",
+        "genotypes",
+        "Invalid population selected!")
 
 
 @genotypesbp.route(