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-rw-r--r--uploader/genotypes/models.py16
1 files changed, 16 insertions, 0 deletions
diff --git a/uploader/genotypes/models.py b/uploader/genotypes/models.py
index 53c5fb8..642caa6 100644
--- a/uploader/genotypes/models.py
+++ b/uploader/genotypes/models.py
@@ -39,3 +39,19 @@ def genotype_markers(
cursor.execute(_query, (species_id,))
debug_query(cursor)
return tuple(dict(row) for row in cursor.fetchall())
+
+
+def genotype_datasets(
+ conn: mdb.Connection,
+ species_id: int,
+ population_id: int
+) -> tuple[dict, ...]:
+ """Retrieve genotype datasets from the database."""
+ with conn.cursor(cursorclass=DictCursor) as cursor:
+ cursor.execute(
+ "SELECT gf.* FROM Species AS s INNER JOIN InbredSet AS iset "
+ "ON s.Id=iset.SpeciesId INNER JOIN GenoFreeze AS gf "
+ "ON iset.Id=gf.InbredSetId "
+ "WHERE s.Id=%s AND iset.Id=%s",
+ (species_id, population_id))
+ return tuple(dict(row) for row in cursor.fetchall())