diff options
Diffstat (limited to 'uploader/db')
| -rw-r--r-- | uploader/db/datasets.py | 4 | ||||
| -rw-r--r-- | uploader/db/platforms.py | 25 |
2 files changed, 2 insertions, 27 deletions
diff --git a/uploader/db/datasets.py b/uploader/db/datasets.py index 767ec41..4b263f5 100644 --- a/uploader/db/datasets.py +++ b/uploader/db/datasets.py @@ -53,7 +53,7 @@ def probeset_study_by_id(conn: mdb.Connection, studyid) -> Optional[dict]: _study = cursor.fetchone() return dict(_study) if bool(_study) else None -def probeset_create_study(conn: mdb.Connection,#pylint: disable=[too-many-arguments] +def probeset_create_study(conn: mdb.Connection,#pylint: disable=[too-many-arguments, too-many-positional-arguments] populationid: int, platformid: int, tissueid: int, @@ -87,7 +87,7 @@ def probeset_create_study(conn: mdb.Connection,#pylint: disable=[too-many-argume (studyid, studyid)) return {**studydata, "studyid": studyid} -def probeset_create_dataset(conn: mdb.Connection,#pylint: disable=[too-many-arguments] +def probeset_create_dataset(conn: mdb.Connection,#pylint: disable=[too-many-arguments, too-many-positional-arguments] studyid: int, averageid: int, datasetname: str, diff --git a/uploader/db/platforms.py b/uploader/db/platforms.py deleted file mode 100644 index cb527a7..0000000 --- a/uploader/db/platforms.py +++ /dev/null @@ -1,25 +0,0 @@ -"""Handle db interactions for platforms.""" -from typing import Optional - -import MySQLdb as mdb -from MySQLdb.cursors import DictCursor - -def platforms_by_species( - conn: mdb.Connection, speciesid: int) -> tuple[dict, ...]: - """Retrieve platforms by the species""" - with conn.cursor(cursorclass=DictCursor) as cursor: - cursor.execute("SELECT * FROM GeneChip WHERE SpeciesId=%s " - "ORDER BY GeneChipName ASC", - (speciesid,)) - return tuple(dict(row) for row in cursor.fetchall()) - -def platform_by_id(conn: mdb.Connection, platformid: int) -> Optional[dict]: - """Retrieve a platform by its ID""" - with conn.cursor(cursorclass=DictCursor) as cursor: - cursor.execute("SELECT * FROM GeneChip WHERE Id=%s", - (platformid,)) - result = cursor.fetchone() - if bool(result): - return dict(result) - - return None |