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-rw-r--r--tests/r_qtl/test_r_qtl2_pheno.py11
1 files changed, 11 insertions, 0 deletions
diff --git a/tests/r_qtl/test_r_qtl2_pheno.py b/tests/r_qtl/test_r_qtl2_pheno.py
index c7c0c86..d31ad54 100644
--- a/tests/r_qtl/test_r_qtl2_pheno.py
+++ b/tests/r_qtl/test_r_qtl2_pheno.py
@@ -57,3 +57,14 @@ def test_parse_phenocovar_files(filepath, expected):
with ZipFile(Path(filepath).absolute(), "r") as zfile:
cdata = rqtl2.control_data(zfile)
assert tuple(rqtl2.file_data(zfile, "phenocovar", cdata)) == expected
+
+
+@pytest.mark.unit_test
+@pytest.mark.parametrize(
+ "filepath,expected",
+ (("tests/r_qtl/test_files/test_pheno.zip",
+ ("1", "2", "3", "4", "5")),
+ ("tests/r_qtl/test_files/test_pheno_transposed.zip",
+ ("1", "2", "3", "4", "5"))))
+def test_load_geno_samples(filepath, expected):
+ assert sorted(rqtl2.load_pheno_samples(filepath)) == sorted(expected)