diff options
Diffstat (limited to 'tests/r_qtl')
| -rw-r--r-- | tests/r_qtl/test_r_qtl2_map_files.py | 40 | ||||
| -rw-r--r-- | tests/r_qtl/test_r_qtl2_pheno.py | 20 |
2 files changed, 30 insertions, 30 deletions
diff --git a/tests/r_qtl/test_r_qtl2_map_files.py b/tests/r_qtl/test_r_qtl2_map_files.py index 5c8ca6a..3427ffb 100644 --- a/tests/r_qtl/test_r_qtl2_map_files.py +++ b/tests/r_qtl/test_r_qtl2_map_files.py @@ -11,32 +11,32 @@ from r_qtl import r_qtl2 as rqtl2 "relpath,mapfiletype,expected", (("tests/r_qtl/test_files/test_gmap.zip", "gmap", - ({"marker": "PVV4", "chr": "1", "pos": "0.000000"}, - {"marker": "AXR-1", "chr": "1", "pos": "6.250674"}, - {"marker": "HH.335C-Col/PhyA", "chr": "1", "pos": "9.303868"}, - {"marker": "EC.480C", "chr": "1", "pos": "12.577629"}, - {"marker": "EC.66C", "chr": "1", "pos": "18.392830"})), + ({"id": "PVV4", "chr": "1", "pos": "0.000000"}, + {"id": "AXR-1", "chr": "1", "pos": "6.250674"}, + {"id": "HH.335C-Col/PhyA", "chr": "1", "pos": "9.303868"}, + {"id": "EC.480C", "chr": "1", "pos": "12.577629"}, + {"id": "EC.66C", "chr": "1", "pos": "18.392830"})), ("tests/r_qtl/test_files/test_gmap_transposed.zip", "gmap", - ({"marker": "PVV4", "chr": "1", "pos": "0.000000"}, - {"marker": "AXR-1", "chr": "1", "pos": "6.250674"}, - {"marker": "HH.335C-Col/PhyA", "chr": "1", "pos": "9.303868"}, - {"marker": "EC.480C", "chr": "1", "pos": "12.577629"}, - {"marker": "EC.66C", "chr": "1", "pos": "18.392830"})), + ({"id": "PVV4", "chr": "1", "pos": "0.000000"}, + {"id": "AXR-1", "chr": "1", "pos": "6.250674"}, + {"id": "HH.335C-Col/PhyA", "chr": "1", "pos": "9.303868"}, + {"id": "EC.480C", "chr": "1", "pos": "12.577629"}, + {"id": "EC.66C", "chr": "1", "pos": "18.392830"})), ("tests/r_qtl/test_files/test_pmap.zip", "pmap", - ({"marker": "D1Mit18", "chr": "1", "pos": "52.418656"}, - {"marker": "D1Mit80", "chr": "1", "pos": "86.377953"}, - {"marker": "D1Mit17", "chr": "1", "pos": "189.571337"}, - {"marker": "D2Mit379", "chr": "2", "pos": "37.451062"}, - {"marker": "D2Mit75", "chr": "2", "pos": "80.584782"})), + ({"id": "D1Mit18", "chr": "1", "pos": "52.418656"}, + {"id": "D1Mit80", "chr": "1", "pos": "86.377953"}, + {"id": "D1Mit17", "chr": "1", "pos": "189.571337"}, + {"id": "D2Mit379", "chr": "2", "pos": "37.451062"}, + {"id": "D2Mit75", "chr": "2", "pos": "80.584782"})), ("tests/r_qtl/test_files/test_pmap_transposed.zip", "pmap", - ({"marker": "D1Mit18", "chr": "1", "pos": "52.418656"}, - {"marker": "D1Mit80", "chr": "1", "pos": "86.377953"}, - {"marker": "D1Mit17", "chr": "1", "pos": "189.571337"}, - {"marker": "D2Mit379", "chr": "2", "pos": "37.451062"}, - {"marker": "D2Mit75", "chr": "2", "pos": "80.584782"})))) + ({"id": "D1Mit18", "chr": "1", "pos": "52.418656"}, + {"id": "D1Mit80", "chr": "1", "pos": "86.377953"}, + {"id": "D1Mit17", "chr": "1", "pos": "189.571337"}, + {"id": "D2Mit379", "chr": "2", "pos": "37.451062"}, + {"id": "D2Mit75", "chr": "2", "pos": "80.584782"})))) def test_parse_map_files(relpath, mapfiletype, expected): """ GIVEN: A path to a zip file, `relpath` and the type of the map file, diff --git a/tests/r_qtl/test_r_qtl2_pheno.py b/tests/r_qtl/test_r_qtl2_pheno.py index 66850a0..a7de675 100644 --- a/tests/r_qtl/test_r_qtl2_pheno.py +++ b/tests/r_qtl/test_r_qtl2_pheno.py @@ -36,17 +36,17 @@ def test_parse_pheno_files(filepath, expected): @pytest.mark.parametrize( "filepath,expected", (("tests/r_qtl/test_files/test_phenocovar.zip", - ({"pheno": "T0", "time (hrs)": "0"}, - {"pheno": "T2", "time (hrs)": "0.0333333333333333"}, - {"pheno": "T4", "time (hrs)": "0.0666666666666667"}, - {"pheno": "T6", "time (hrs)": "0.1"}, - {"pheno": "T8", "time (hrs)": "0.133333333333333"})), + ({"id": "T0", "time (hrs)": "0"}, + {"id": "T2", "time (hrs)": "0.0333333333333333"}, + {"id": "T4", "time (hrs)": "0.0666666666666667"}, + {"id": "T6", "time (hrs)": "0.1"}, + {"id": "T8", "time (hrs)": "0.133333333333333"})), ("tests/r_qtl/test_files/test_phenocovar_transposed.zip", - ({"pheno": "T0", "time (hrs)": "0"}, - {"pheno": "T2", "time (hrs)": "0.0333333333333333"}, - {"pheno": "T4", "time (hrs)": "0.0666666666666667"}, - {"pheno": "T6", "time (hrs)": "0.1"}, - {"pheno": "T8", "time (hrs)": "0.133333333333333"})))) + ({"id": "T0", "time (hrs)": "0"}, + {"id": "T2", "time (hrs)": "0.0333333333333333"}, + {"id": "T4", "time (hrs)": "0.0666666666666667"}, + {"id": "T6", "time (hrs)": "0.1"}, + {"id": "T8", "time (hrs)": "0.133333333333333"})))) def test_parse_phenocovar_files(filepath, expected): """Test parsing of 'phenocovar' files from the R/qtl2 bundle. |