diff options
Diffstat (limited to 'tests/r_qtl/test_r_qtl2_pheno.py')
-rw-r--r-- | tests/r_qtl/test_r_qtl2_pheno.py | 11 |
1 files changed, 8 insertions, 3 deletions
diff --git a/tests/r_qtl/test_r_qtl2_pheno.py b/tests/r_qtl/test_r_qtl2_pheno.py index d31ad54..54244fc 100644 --- a/tests/r_qtl/test_r_qtl2_pheno.py +++ b/tests/r_qtl/test_r_qtl2_pheno.py @@ -61,10 +61,15 @@ def test_parse_phenocovar_files(filepath, expected): @pytest.mark.unit_test @pytest.mark.parametrize( - "filepath,expected", + "filepath,member,transposed,expected", (("tests/r_qtl/test_files/test_pheno.zip", + "test_pheno.csv", + False, ("1", "2", "3", "4", "5")), ("tests/r_qtl/test_files/test_pheno_transposed.zip", + "test_pheno_transposed.csv", + True, ("1", "2", "3", "4", "5")))) -def test_load_geno_samples(filepath, expected): - assert sorted(rqtl2.load_pheno_samples(filepath)) == sorted(expected) +def test_load_geno_samples(filepath, member, transposed, expected): + assert sorted(rqtl2.load_samples( + filepath, member, transposed)) == sorted(expected) |