diff options
Diffstat (limited to 'tests/r_qtl/test_r_qtl2_geno.py')
| -rw-r--r-- | tests/r_qtl/test_r_qtl2_geno.py | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/tests/r_qtl/test_r_qtl2_geno.py b/tests/r_qtl/test_r_qtl2_geno.py index c33984e..d3c77e6 100644 --- a/tests/r_qtl/test_r_qtl2_geno.py +++ b/tests/r_qtl/test_r_qtl2_geno.py @@ -269,3 +269,16 @@ def test_parse_founder_geno_files(relpath, expected): "founder_geno", cdata, *rqtl2.make_process_data_geno(cdata))) == expected + + +@pytest.mark.unit_test +@pytest.mark.parametrize( + "filepath,expected", + (("tests/r_qtl/test_files/test_geno.zip", + ("1", "2", "3", "4", "5", "6", "7", "8", "9", "10")), + ("tests/r_qtl/test_files/test_geno_transposed.zip", + ("1", "2", "3", "4", "5", "6", "7", "8", "9", "10")), + ("tests/r_qtl/test_files/test_geno_multiple.zip", + ("1", "2", "3", "4", "5", "6", "7", "8", "9", "10")))) +def test_load_geno_samples(filepath, expected): + assert sorted(rqtl2.load_geno_samples(filepath)) == sorted(expected) |