diff options
Diffstat (limited to 'tests/qc/test_header.py')
| -rw-r--r-- | tests/qc/test_header.py | 25 |
1 files changed, 15 insertions, 10 deletions
diff --git a/tests/qc/test_header.py b/tests/qc/test_header.py index 5e54122..06647a2 100644 --- a/tests/qc/test_header.py +++ b/tests/qc/test_header.py @@ -11,17 +11,22 @@ from quality_control.headers import ( @given(headers=st.lists(st.text(max_size=10), max_size=1)) def test_invalid_header_with_list_of_one_value(headers): """Test `invalid_header` with invalid header row""" - assert invalid_header(0, headers) == InvalidValue( - 0, 0, "<TAB>".join(headers), + assert invalid_header("test.file", 0, headers) == InvalidValue( + "test.file", 0, 0, "<TAB>".join(headers), "The header MUST contain at least 2 columns") @pytest.mark.unit_test @given(headings=st.lists(st.text(min_size=2, max_size=10), min_size=2)) def test_invalid_headings_with_invalid_inputs(headings): "Verify that the check for header validity works" - assert invalid_headings(0, ("BXD1", "BXD2", "BXD3"), headings) == tuple( - InvalidValue(0, col, heading, f"'{heading}' not a valid strain.") - for col, heading in enumerate(headings, start=2)) + assert invalid_headings( + "test.file", 0, ("BXD1", "BXD2", "BXD3"), headings) == tuple( + InvalidValue("test.file", + 0, + col, + heading, + f"'{heading}' not a valid strain.") + for col, heading in enumerate(headings, start=2)) @pytest.mark.unit_test @pytest.mark.parametrize( @@ -30,7 +35,7 @@ def test_invalid_headings_with_invalid_inputs(headings): (("Individual", "AStrain", "AnotherStrain", "YetAnotherStrain"))]) def test_invalid_header_with_valid_headers(headers): "Verify that the check for header validity works" - assert invalid_header(0, headers) is None + assert invalid_header("test.file", 0, headers) is None @pytest.mark.unit_test @pytest.mark.parametrize( @@ -40,7 +45,7 @@ def test_invalid_header_with_valid_headers(headers): ("AStrain", "AnotherStrain", "YetAnotherStrain"))]) def test_invalid_headings_with_valid_headings(strains, headings): "Verify that the check for header validity works" - assert invalid_headings(0, strains, headings) == tuple() + assert invalid_headings("test.file", 0, strains, headings) == tuple() @pytest.mark.unit_test @pytest.mark.parametrize( @@ -50,8 +55,8 @@ def test_invalid_headings_with_valid_headings(strains, headings): "AStrain"), {"AStrain": (2, 5)})]) def test_duplicate_headers_with_repeated_column_headings(headers, repeated): """Check that parsing fails if any header is duplicated""" - assert duplicate_headings(0, headers) == tuple( - DuplicateHeading(0, cols, head, ( + assert duplicate_headings("test.file", 0, headers) == tuple( + DuplicateHeading("test.file", 0, cols, head, ( f"Heading '{head}', is repeated in columns " f"{','.join(str(i) for i in cols)}")) for head, cols in repeated.items()) @@ -63,4 +68,4 @@ def test_duplicate_headers_with_repeated_column_headings(headers, repeated): (("Individual", "AStrain", "AnotherStrain", "YetAnotherStrain",))]) def test_duplicate_headers_with_unique_column_headings(headers): """Check that parsing fails if any header is duplicated""" - assert duplicate_headings(0, headers) == tuple() + assert duplicate_headings("test.file", 0, headers) == tuple() |