diff options
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/rqtl2/phenotypes_qc.py | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py index d8bf3c2..2e7937f 100644 --- a/scripts/rqtl2/phenotypes_qc.py +++ b/scripts/rqtl2/phenotypes_qc.py @@ -1,5 +1,6 @@ """Run quality control on phenotypes-specific files in the bundle.""" import sys +import uuid import shutil import logging import tempfile @@ -111,11 +112,13 @@ def check_for_averages_files( } -def extract_bundle(bundle: Path, workdir: Path) -> tuple[Path, tuple[Path, ...]]: +def extract_bundle( + bundle: Path, workdir: Path, jobid: uuid.UUID +) -> tuple[Path, tuple[Path, ...]]: """Extract the bundle.""" with ZipFile(bundle) as zfile: extractiondir = workdir.joinpath( - f"{sha256_digest_over_file(bundle)}_phenotype_qc_{bundle.name}") + f"{str(jobid)}-{sha256_digest_over_file(bundle)}-{bundle.name}") return extractiondir, rqtl2.extract(zfile, extractiondir) |