diff options
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/qc_on_rqtl2_bundle.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/qc_on_rqtl2_bundle.py b/scripts/qc_on_rqtl2_bundle.py index d77b6c2..027f387 100644 --- a/scripts/qc_on_rqtl2_bundle.py +++ b/scripts/qc_on_rqtl2_bundle.py @@ -116,7 +116,7 @@ def qc_geno_errors(rconn, fqjobid, zfile, logger) -> bool: logger.info("Checking for errors in the 'geno' file…") gerrs = tuple(retrieve_errors_with_progress( rconn, fqjobid, zfile, "geno", - (rqc.make_genocode_checker(cdata.get("genotypes", {})),))) + (rqc.make_genocode_checker(cdata.get("genotypes", {}), "geno"),))) add_to_errors(rconn, fqjobid, "errors-generic", tuple( err for err in gerrs if isinstance(err, rqfe.MissingFile))) add_to_errors(rconn, fqjobid, "errors-geno", tuple( |