diff options
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/insert_data.py | 3 | ||||
| -rw-r--r-- | scripts/qc.py | 8 | ||||
| -rw-r--r-- | scripts/rqtl2/install_genotypes.py | 2 | ||||
| -rw-r--r-- | scripts/rqtl2/install_phenos.py | 2 |
4 files changed, 7 insertions, 8 deletions
diff --git a/scripts/insert_data.py b/scripts/insert_data.py index 0ac3799..72fc897 100644 --- a/scripts/insert_data.py +++ b/scripts/insert_data.py @@ -11,7 +11,8 @@ import MySQLdb as mdb from redis import Redis from MySQLdb.cursors import DictCursor -from quality_control.parsing import take +from functional_tools import take + from quality_control.file_utils import open_file from qc_app.db_utils import database_connection from qc_app.check_connections import check_db, check_redis diff --git a/scripts/qc.py b/scripts/qc.py index 2057cd6..7d41d6c 100644 --- a/scripts/qc.py +++ b/scripts/qc.py @@ -5,13 +5,11 @@ import argparse import mimetypes from typing import Union, Callable +from functional_tools import take + from quality_control.utils import make_progress_calculator from quality_control.errors import InvalidValue, DuplicateHeading -from quality_control.parsing import ( - take, - FileType, - strain_names, - collect_errors) +from quality_control.parsing import FileType, strain_names, collect_errors def is_file_mime(filepath:str, mimetype:str) -> bool: diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py index 354bff0..77e7163 100644 --- a/scripts/rqtl2/install_genotypes.py +++ b/scripts/rqtl2/install_genotypes.py @@ -12,7 +12,7 @@ from MySQLdb.cursors import DictCursor from r_qtl import r_qtl2 as rqtl2 -from quality_control.parsing import take +from functional_tools import take from scripts.rqtl2.entry import build_main from scripts.cli_parser import init_cli_parser diff --git a/scripts/rqtl2/install_phenos.py b/scripts/rqtl2/install_phenos.py index b3d445b..4fdf428 100644 --- a/scripts/rqtl2/install_phenos.py +++ b/scripts/rqtl2/install_phenos.py @@ -15,7 +15,7 @@ from scripts.rqtl2.cli_parser import add_common_arguments from r_qtl import r_qtl2 as rqtl2 -from quality_control.parsing import take +from functional_tools import take stderr_handler = logging.StreamHandler(stream=sys.stderr) logger = logging.getLogger("install_phenos") logger.addHandler(stderr_handler) |