diff options
Diffstat (limited to 'scripts/rqtl2')
| -rw-r--r-- | scripts/rqtl2/install_genotypes.py | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py index d0731a2..68ae365 100644 --- a/scripts/rqtl2/install_genotypes.py +++ b/scripts/rqtl2/install_genotypes.py @@ -40,11 +40,12 @@ def insert_markers(dbconn: mdb.Connection, "VALUES (%(speciesid)s, %(marker)s, %(marker)s, %(chr)s, %(pos)s) " "ON DUPLICATE KEY UPDATE SpeciesId=SpeciesId", tuple({ - "speciesid": speciesid, - "marker": marker, - "chr": mdata.get(marker, {}).get("chr"), - "pos": mdata.get(marker, {}).get("pos") - } for marker in markers)) + (speciesid, marker): { + "speciesid": speciesid, + "marker": marker, + "chr": mdata.get(marker, {}).get("chr"), + "pos": mdata.get(marker, {}).get("pos") + } for marker in markers}.items())) return cursor.rowcount def insert_individuals(dbconn: mdb.Connection, |