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-rw-r--r--scripts/rqtl2/install_phenos.py5
1 files changed, 3 insertions, 2 deletions
diff --git a/scripts/rqtl2/install_phenos.py b/scripts/rqtl2/install_phenos.py
index 4fdf428..5c25866 100644
--- a/scripts/rqtl2/install_phenos.py
+++ b/scripts/rqtl2/install_phenos.py
@@ -54,12 +54,13 @@ def insert_probeset_data(dbconn: mdb.Connection,
data = tuple(
{**row, "psdid": lastid + idx}
for idx, row in enumerate(
- ({
+ (item for item in ({
"sampleid": sampleids[innerrow["id"]],
"value": innerrow[pheno],
"pheno": pheno
} for innerrow in phenos for pheno in
- (key for key in innerrow.keys() if key != "id")),
+ (key for key in innerrow.keys() if key != "id"))
+ if item["value"] is not None),
start=1))
cursor.executemany(
"INSERT INTO ProbeSetData(Id, StrainId, value) "