diff options
Diffstat (limited to 'scripts/rqtl2/phenotypes_qc.py')
| -rw-r--r-- | scripts/rqtl2/phenotypes_qc.py | 14 |
1 files changed, 1 insertions, 13 deletions
diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py index ccd2110..4191df9 100644 --- a/scripts/rqtl2/phenotypes_qc.py +++ b/scripts/rqtl2/phenotypes_qc.py @@ -378,17 +378,5 @@ if __name__ == "__main__": type=Path) return parser.parse_args() - _logger = getLogger("phenotypes_qc") - _logger.addHandler(StreamHandler(stream=sys.stderr)) - - main = build_main( - cli_args(), - lambda dbconn, args: run_qc(dbconn, - args.rqtl2bundle, - args.working_dir, - args.speciesid, - args.populationid, - _logger), - _logger, - "DEBUG") + main = build_main(cli_args(), run_qc, __MODULE__) sys.exit(main()) |