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-rw-r--r--scripts/rqtl2/install_phenos.py5
1 files changed, 4 insertions, 1 deletions
diff --git a/scripts/rqtl2/install_phenos.py b/scripts/rqtl2/install_phenos.py
index a6e9fb2..9059cd6 100644
--- a/scripts/rqtl2/install_phenos.py
+++ b/scripts/rqtl2/install_phenos.py
@@ -6,6 +6,7 @@ from zipfile import ZipFile
from functools import reduce
from logging import Logger, getLogger
+from redis import Redis
import MySQLdb as mdb
from MySQLdb.cursors import DictCursor
@@ -95,8 +96,10 @@ def cross_reference_probeset_data(dbconn: mdb.Connection,
} for row in dataids))
return cursor.rowcount
-def install_pheno_files(#pylint: disable=[too-many-arguments, too-many-locals]
+def install_pheno_files(#pylint: disable=[too-many-locals]
+ rconn: Redis,#pylint: disable=[unused-argument]
dbconn: mdb.Connection,
+ fullyqualifiedjobid: str,#pylint: disable=[unused-argument]
args: argparse.Namespace,
logger: Logger = getLogger()) -> int:
"""Load data in `pheno` files and other related files into the database."""