diff options
Diffstat (limited to 'scripts/rqtl2/install_phenos.py')
-rw-r--r-- | scripts/rqtl2/install_phenos.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/scripts/rqtl2/install_phenos.py b/scripts/rqtl2/install_phenos.py index a6e9fb2..9059cd6 100644 --- a/scripts/rqtl2/install_phenos.py +++ b/scripts/rqtl2/install_phenos.py @@ -6,6 +6,7 @@ from zipfile import ZipFile from functools import reduce from logging import Logger, getLogger +from redis import Redis import MySQLdb as mdb from MySQLdb.cursors import DictCursor @@ -95,8 +96,10 @@ def cross_reference_probeset_data(dbconn: mdb.Connection, } for row in dataids)) return cursor.rowcount -def install_pheno_files(#pylint: disable=[too-many-arguments, too-many-locals] +def install_pheno_files(#pylint: disable=[too-many-locals] + rconn: Redis,#pylint: disable=[unused-argument] dbconn: mdb.Connection, + fullyqualifiedjobid: str,#pylint: disable=[unused-argument] args: argparse.Namespace, logger: Logger = getLogger()) -> int: """Load data in `pheno` files and other related files into the database.""" |