diff options
Diffstat (limited to 'scripts/rqtl2/install_genotypes.py')
| -rw-r--r-- | scripts/rqtl2/install_genotypes.py | 16 |
1 files changed, 4 insertions, 12 deletions
diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py index 6b89142..abc3f07 100644 --- a/scripts/rqtl2/install_genotypes.py +++ b/scripts/rqtl2/install_genotypes.py @@ -5,7 +5,7 @@ from pathlib import Path from zipfile import ZipFile from functools import reduce from typing import Iterator, Optional -from logging import Logger, getLogger, StreamHandler +from logging import Logger, getLogger import MySQLdb as mdb from MySQLdb.cursors import DictCursor @@ -19,6 +19,8 @@ from scripts.rqtl2.entry import build_main from scripts.rqtl2.cli_parser import add_common_arguments from scripts.cli_parser import init_cli_parser, add_global_data_arguments +__MODULE__ = "scripts.rqtl2.install_genotypes" + def insert_markers( dbconn: mdb.Connection, speciesid: int, @@ -253,15 +255,5 @@ if __name__ == "__main__": return parser.parse_args() - thelogger = getLogger("install_genotypes") - thelogger.addHandler(StreamHandler(stream=sys.stderr)) - main = build_main( - cli_args(), - lambda dbconn, args: install_genotypes(dbconn, - args.speciesid, - args.populationid, - args.datasetid, - args.rqtl2bundle), - thelogger, - "INFO") + main = build_main(cli_args(), install_genotypes, __MODULE__) sys.exit(main()) |