aboutsummaryrefslogtreecommitdiff
path: root/scripts/rqtl2/install_genotypes.py
diff options
context:
space:
mode:
Diffstat (limited to 'scripts/rqtl2/install_genotypes.py')
-rw-r--r--scripts/rqtl2/install_genotypes.py6
1 files changed, 1 insertions, 5 deletions
diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py
index a555d46..6ae3788 100644
--- a/scripts/rqtl2/install_genotypes.py
+++ b/scripts/rqtl2/install_genotypes.py
@@ -132,11 +132,7 @@ def install_genotypes(dbconn: mdb.Connection,
logger.info(("Loading genotypes. This could take a while. "
"Please be patient."))
- cdata = rqtl2.control_data(zfile)
- genotypes = rqtl2.file_data(zfile,
- "geno",
- cdata,
- rqtl2.make_process_data_geno(cdata))
+ genotypes = rqtl2.genotype_data(zfile)
while True:
batch = tuple(take(genotypes, 5000))
if len(batch) == 0: