diff options
Diffstat (limited to 'scripts/rqtl2/install_genotypes.py')
| -rw-r--r-- | scripts/rqtl2/install_genotypes.py | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py index 77e7163..733ccf9 100644 --- a/scripts/rqtl2/install_genotypes.py +++ b/scripts/rqtl2/install_genotypes.py @@ -15,8 +15,8 @@ from r_qtl import r_qtl2 as rqtl2 from functional_tools import take from scripts.rqtl2.entry import build_main -from scripts.cli_parser import init_cli_parser from scripts.rqtl2.cli_parser import add_common_arguments +from scripts.cli_parser import init_cli_parser, add_global_data_arguments stderr_handler = logging.StreamHandler(stream=sys.stderr) logger = logging.getLogger("install_genotypes") @@ -217,14 +217,14 @@ if __name__ == "__main__": def cli_args(): """Process command-line arguments for install_genotypes""" - parser = add_common_arguments(init_cli_parser( + parser = add_common_arguments(add_global_data_arguments(init_cli_parser( "install_genotypes", - "Parse genotypes from R/qtl2 bundle into the database.")) + "Parse genotypes from R/qtl2 bundle into the database."))) return parser.parse_args() main = build_main( - cli_args, + cli_args(), lambda dbconn, args: install_genotypes(dbconn, args.speciesid, args.populationid, |