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Diffstat (limited to 'scripts/phenotypes_bulk_edit.py')
| -rw-r--r-- | scripts/phenotypes_bulk_edit.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/scripts/phenotypes_bulk_edit.py b/scripts/phenotypes_bulk_edit.py index 488805c..4888924 100644 --- a/scripts/phenotypes_bulk_edit.py +++ b/scripts/phenotypes_bulk_edit.py @@ -13,6 +13,7 @@ from MySQLdb.cursors import DictCursor from gn_libs import jobs, mysqldb, sqlite3 import uploader.publications.pubmed as pmed +from uploader.publications.models import fetch_phenotype_publications logging.basicConfig( format="%(asctime)s — %(filename)s:%(lineno)s — %(levelname)s: %(message)s") logger = logging.getLogger(__name__) @@ -163,7 +164,7 @@ def compute_differences( pub_diff = publications_differences( conn, file_contents, - __fetch_publications__(conn, pheno_xref_ids), + fetch_phenotype_publications(conn, pheno_xref_ids), pubmed_ids) logger.debug("Publications diff: %s", pub_diff) # 2. Data differences |