diff options
Diffstat (limited to 'r_qtl/r_qtl2.py')
| -rw-r--r-- | r_qtl/r_qtl2.py | 35 |
1 files changed, 19 insertions, 16 deletions
diff --git a/r_qtl/r_qtl2.py b/r_qtl/r_qtl2.py index a8958a0..d3a3805 100644 --- a/r_qtl/r_qtl2.py +++ b/r_qtl/r_qtl2.py @@ -189,23 +189,26 @@ def file_data(zfile: ZipFile, [str, tuple[str, ...], tuple[str, ...]], tuple[dict, ...]] = __default_process_value_transposed__) -> Iterator[dict]: """Load data from files in R/qtl2 zip bundle.""" - if isinstance(cdata[member_key], list): - for row in (line for lines in - (file_data( - zfile, member_key, {**cdata, member_key: innerfile}, - process_value, process_transposed_value) - for innerfile in cdata[member_key]) - for line in lines): - yield row - return - if not cdata.get(f"{member_key}_transposed", False): - for row in with_non_transposed(zfile, member_key, cdata, process_value): - yield row - return + try: + if isinstance(cdata[member_key], list): + for row in (line for lines in + (file_data( + zfile, member_key, {**cdata, member_key: innerfile}, + process_value, process_transposed_value) + for innerfile in cdata[member_key]) + for line in lines): + yield row + return + if not cdata.get(f"{member_key}_transposed", False): + for row in with_non_transposed(zfile, member_key, cdata, process_value): + yield row + return - for row in with_transposed( - zfile, member_key, cdata, process_transposed_value): - yield row + for row in with_transposed( + zfile, member_key, cdata, process_transposed_value): + yield row + except KeyError as exc: + raise InvalidFormat(*exc.args) from exc def cross_information(zfile: ZipFile, cdata: dict) -> Iterator[dict]: """Load cross information where present.""" |