diff options
Diffstat (limited to 'r_qtl/r_qtl2.py')
| -rw-r--r-- | r_qtl/r_qtl2.py | 22 |
1 files changed, 0 insertions, 22 deletions
diff --git a/r_qtl/r_qtl2.py b/r_qtl/r_qtl2.py index c2828d2..f8c08d9 100644 --- a/r_qtl/r_qtl2.py +++ b/r_qtl/r_qtl2.py @@ -288,28 +288,6 @@ def sex_information(zfile: ZipFile, cdata: dict) -> Iterator[dict]: key: chain(value, partial(replace_sex_info, cdata=cdata)) for key, value in row.items() if key not in ci_fields} -def validate_bundle(zfile: ZipFile): - """Ensure the R/qtl2 bundle is valid.""" - cdata = control_data(zfile) - def __member_exists_p__(zfile, member): - if isinstance(member, str): - zfile.getinfo(member) - else: - for inner in member: - zfile.getinfo(inner) - - try: - for member in (key for key in cdata.keys() if key in __FILE_TYPES__): - __member_exists_p__(zfile, cdata[member]) - - if "file" in cdata.get("sex", {}): - __member_exists_p__(zfile, cdata["sex"]["file"]) - - if "file" in cdata.get("cross_info", {}): - __member_exists_p__(zfile, cdata["cross_info"]["file"]) - except KeyError as kerr: - raise InvalidFormat(*kerr.args) from kerr - def genotype_data(zfile: ZipFile): """Convenience function to genotype data from R/qtl2 bundle.""" cdata = control_data(zfile) |