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-rw-r--r--quality_control/file_utils.py13
1 files changed, 13 insertions, 0 deletions
diff --git a/quality_control/file_utils.py b/quality_control/file_utils.py
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+"Common file utilities"
+from typing import Union
+from pathlib import Path
+from io import TextIOWrapper
+from zipfile import ZipFile, is_zipfile
+
+def open_file(filepath: Union[str, Path]) -> Union[ZipFile, TextIOWrapper]:
+ "Transparently open both TSV and ZIP files"
+ if not is_zipfile(filepath):
+ return open(filepath, encoding="utf-8")
+
+ with ZipFile(filepath, "r") as zfile:
+ return zfile.open(zfile.infolist()[0], "r")