2 files changed, 42 insertions, 11 deletions
diff --git a/qc_app/templates/rqtl2/rqtl2-qc-job-status.html b/qc_app/templates/rqtl2/rqtl2-qc-job-status.html
index 85b8864..4bdc983 100644
--- a/qc_app/templates/rqtl2/rqtl2-qc-job-status.html
+++ b/qc_app/templates/rqtl2/rqtl2-qc-job-status.html
@@ -10,14 +10,29 @@
 {%block contents%}
 <h1 class="heading">R/qtl2 bundle: QC job status</h1>
 
-<h2 class="heading">R/qtl2 bundle: QC Job Status</h2>
-
-<hr />
-<p>The job:</p>
-<hr />
-{{job}}
-<hr />
-<hr />
+{%if geno_percent%}
+<p>
+  <h2>Checking 'geno' file:</h2>
+  <progress id="prg-geno-checking" value="{{geno_percent}}" max="100">
+    {{geno_percent}}%</progress>
+  {{geno_percent}}%</p>
+{%endif%}
+
+{%if pheno_percent%}
+<p>
+  <h2>Checking 'pheno' file:</h2>
+  <progress id="prg-pheno-checking" value="{{pheno_percent}}" max="100">
+    {{pheno_percent}}%</progress>
+  {{pheno_percent}}%</p>
+{%endif%}
+
+{%if phenose_percent%}
+<p>
+  <h2>Checking 'phenose' file:</h2>
+  <progress id="prg-phenose-checking" value="{{phenose_percent}}" max="100">
+    {{phenose_percent}}%</progress>
+  {{phenose_percent}}%</p>
+{%endif%}
 
 <h4>Log</h4>
 <div class="cli-output">
diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py
index 66b219d..a32019f 100644
--- a/qc_app/upload/rqtl2.py
+++ b/qc_app/upload/rqtl2.py
@@ -1,6 +1,7 @@
 """Module to handle uploading of R/qtl2 bundles."""
 import sys
 import json
+from typing import Union
 from pathlib import Path
 from datetime import date
 from uuid import UUID, uuid4
@@ -227,9 +228,24 @@ def rqtl2_bundle_qc_status(jobid: UUID):
                     rqtl2bundle=Path(jobmeta["rqtl2-bundle-file"]),
                     rqtl2bundleorig=jobmeta["original-filename"])
 
-            return render_template("rqtl2/rqtl2-qc-job-status.html",
-                                   job=thejob,
-                                   messages=tuple())
+            def compute_percentage(thejob, filetype) -> Union[str, None]:
+                if f"{filetype}-linecount" in thejob:
+                    return "100"
+                if f"{filetype}-filesize" in thejob:
+                    percent = ((int(thejob.get(f"{filetype}-checked", 0))
+                                /
+                                int(thejob.get(f"{filetype}-filesize", 1)))
+                               * 100)
+                    return f"{percent:.2f}"
+                return None
+
+            return render_template(
+                "rqtl2/rqtl2-qc-job-status.html",
+                job=thejob,
+                geno_percent=compute_percentage(thejob, "geno"),
+                pheno_percent=compute_percentage(thejob, "pheno"),
+                phenose_percent=compute_percentage(thejob, "phenose"),
+                messages=tuple())
         except jobs.JobNotFound:
             return render_template("rqtl2/no-such-job.html", jobid=jobid)