diff options
Diffstat (limited to 'qc_app/upload/rqtl2.py')
| -rw-r--r-- | qc_app/upload/rqtl2.py | 10 |
1 files changed, 6 insertions, 4 deletions
diff --git a/qc_app/upload/rqtl2.py b/qc_app/upload/rqtl2.py index eea49e1..2d032f8 100644 --- a/qc_app/upload/rqtl2.py +++ b/qc_app/upload/rqtl2.py @@ -18,6 +18,8 @@ from flask import ( current_app as app) from r_qtl import r_qtl2 +from r_qtl import errors as rqe +from r_qtl import r_qtl2_qc as rqc from r_qtl.errors import InvalidFormat from qc_app import jobs @@ -157,11 +159,11 @@ def upload_rqtl2_bundle(species_id: int, population_id: int): species=species, population=population) - if not bool(request.files.get("rqtl2_bundle")): + if not bool(request.files.get("rqtl2_bundle_file")): raise __RequestError__("No R/qtl2 zip bundle provided.") - the_file = save_file( - request.files["rqtl2_bundle"], Path(app.config["UPLOAD_FOLDER"])) + the_file = save_file(request.files["rqtl2_bundle_file"], + Path(app.config["UPLOAD_FOLDER"])) if not bool(the_file): raise __RequestError__("Please provide a valid R/qtl2 zip bundle.") @@ -170,7 +172,7 @@ def upload_rqtl2_bundle(species_id: int, population_id: int): try: with ZipFile(str(the_file), "r") as zfile: - r_qtl2.validate_bundle(zfile) + rqc.validate_bundle(zfile) return render_template( "rqtl2/upload-rqtl2-bundle-step-02.html", species=species, |