diff options
Diffstat (limited to 'qc_app/templates/rqtl2')
| -rw-r--r-- | qc_app/templates/rqtl2/create-probe-study-success.html | 53 | ||||
| -rw-r--r-- | qc_app/templates/rqtl2/select-probeset-study-id.html | 79 |
2 files changed, 126 insertions, 6 deletions
diff --git a/qc_app/templates/rqtl2/create-probe-study-success.html b/qc_app/templates/rqtl2/create-probe-study-success.html new file mode 100644 index 0000000..1b85d0c --- /dev/null +++ b/qc_app/templates/rqtl2/create-probe-study-success.html @@ -0,0 +1,53 @@ +{%extends "base.html"%} +{%from "flash_messages.html" import flash_messages%} + +{%block title%}Upload R/qtl2 Bundle{%endblock%} + +{%block contents%} +<h2 class="heading">Create ProbeSet Study</h2> + +<div class="explainer"> + <p>You successfully created the ProbeSet study with the following + information. + <dl> + <dt>ID</dt> + <dd>{{study.id}}</dd> + + <dt>Name</dt> + <dd>{{study.name}}</dd> + + <dt>Full Name</dt> + <dd>{{study.fname}}</dd> + + <dt>Short Name</dt> + <dd>{{study.sname}}</dd> + + <dt>Created On</dt> + <dd>{{study.today}}</dd> + </dl> + </p> +</div> + +<form id="frm-upload-rqtl2-bundle" + action="{{url_for('upload.rqtl2.select_dataset_info', + species_id=species.SpeciesId, + population_id=population.InbredSetId)}}" + method="POST" + enctype="multipart/form-data"> + <legend class="heading">Create ProbeSet study</legend> + + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <input type="hidden" name="population_id" + value="{{population.InbredSetId}}" /> + <input type="hidden" name="rqtl2_bundle_file" value="{{rqtl2_bundle_file}}" /> + <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" /> + <input type="hidden" name="probe-study-id" value="{{study.studyid}}" /> + + <fieldset> + <input type="submit" + value="continue" + class="btn btn-main form-col-2" /> + </fieldset> +</form> + +{%endblock%} diff --git a/qc_app/templates/rqtl2/select-probeset-study-id.html b/qc_app/templates/rqtl2/select-probeset-study-id.html index bb31fde..34aa54e 100644 --- a/qc_app/templates/rqtl2/select-probeset-study-id.html +++ b/qc_app/templates/rqtl2/select-probeset-study-id.html @@ -1,5 +1,5 @@ {%extends "base.html"%} -{%from "flash_messages.html" import flash_messages%} +{%from "flash_messages.html" import flash_messages, flash_all_messages%} {%block title%}Upload R/qtl2 Bundle{%endblock%} @@ -12,9 +12,13 @@ <p>This page gives you the ability to do that.</p> </div> +{{flash_all_messages()}} + <form method="POST" - action="#"> - <legend class="heading">Select from existing ProbeSet datasets</legend> + action="{{url_for('upload.rqtl2.select_probeset_study', + species_id=species.SpeciesId, population_id=population.Id)}}" + id="frm:select-probeset-study"> + <legend class="heading">Select from existing ProbeSet studies</legend> <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> <input type="hidden" name="population_id" @@ -51,9 +55,72 @@ <p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p> <form method="POST" - action="#"> - <legend class="heading">Create new ProbeSet dataset</legend> - <strong style="color: red;font-weight:bold;">Under construction</strong> + action="{{url_for('upload.rqtl2.create_probeset_study', + species_id=species.SpeciesId, population_id=population.Id)}}" + id="frm:create-probeset-study"> + <legend class="heading">Create new ProbeSet study</legend> + + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <input type="hidden" name="population_id" + value="{{population.InbredSetId}}" /> + <input type="hidden" name="rqtl2_bundle_file" + value="{{rqtl2_bundle_file}}" /> + <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" /> + + <fieldset> + <label for="select:platform">Platform</label> + <select id="select:platform" + name="platformid" + required="required" + {%if platforms | length == 0%}disabled="disabled"{%endif%}> + <option value="">Select a platform</option> + {%for platform in platforms%} + <option value="{{platform.GeneChipId}}"> + {{platform.GeneChipName}} ({{platform.Name}}) + </option> + {%endfor%} + </select> + </fieldset> + + <fieldset> + <label for="select:tissue">Tissue</label> + <select id="select:tissue" + name="tissueid" + required="required" + {%if tissues | length == 0%}disabled="disabled"{%endif%}> + <option value="">Select tissue</option> + {%for tissue in tissues%} + <option value="{{tissue.Id}}"> + {{tissue.TissueName}} ({{tissue.Short_Name}}) + </option> + {%endfor%} + </select> + </fieldset> + + <fieldset> + <label for="txt:studyname">Study name</label> + <input type="text" id="txt:studyname" name="studyname" + placeholder="Name of the study. (Required)" + required="required" /> + </fieldset> + + <fieldset> + <label for="txt:studyfullname">Study name</label> + <input type="text" id="txt:studyfullname" name="studyfullname" + placeholder="Longer name of the study. (Optional)" /> + </fieldset> + + <fieldset> + <label for="txt:studyshortname">Study name</label> + <input type="text" id="txt:studyshortname" name="studyshortname" + placeholder="Shorter name of the study. (Optional)" /> + </fieldset> + + <fieldset> + <input type="submit" + value="create study" + class="btn btn-main form-col-2" /> + </fieldset> </form> {%endblock%} |