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-rw-r--r--qc_app/templates/rqtl2/create-probe-study-success.html53
-rw-r--r--qc_app/templates/rqtl2/select-probeset-study-id.html79
2 files changed, 126 insertions, 6 deletions
diff --git a/qc_app/templates/rqtl2/create-probe-study-success.html b/qc_app/templates/rqtl2/create-probe-study-success.html
new file mode 100644
index 0000000..1b85d0c
--- /dev/null
+++ b/qc_app/templates/rqtl2/create-probe-study-success.html
@@ -0,0 +1,53 @@
+{%extends "base.html"%}
+{%from "flash_messages.html" import flash_messages%}
+
+{%block title%}Upload R/qtl2 Bundle{%endblock%}
+
+{%block contents%}
+<h2 class="heading">Create ProbeSet Study</h2>
+
+<div class="explainer">
+ <p>You successfully created the ProbeSet study with the following
+ information.
+ <dl>
+ <dt>ID</dt>
+ <dd>{{study.id}}</dd>
+
+ <dt>Name</dt>
+ <dd>{{study.name}}</dd>
+
+ <dt>Full Name</dt>
+ <dd>{{study.fname}}</dd>
+
+ <dt>Short Name</dt>
+ <dd>{{study.sname}}</dd>
+
+ <dt>Created On</dt>
+ <dd>{{study.today}}</dd>
+ </dl>
+ </p>
+</div>
+
+<form id="frm-upload-rqtl2-bundle"
+ action="{{url_for('upload.rqtl2.select_dataset_info',
+ species_id=species.SpeciesId,
+ population_id=population.InbredSetId)}}"
+ method="POST"
+ enctype="multipart/form-data">
+ <legend class="heading">Create ProbeSet study</legend>
+
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+ <input type="hidden" name="population_id"
+ value="{{population.InbredSetId}}" />
+ <input type="hidden" name="rqtl2_bundle_file" value="{{rqtl2_bundle_file}}" />
+ <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
+ <input type="hidden" name="probe-study-id" value="{{study.studyid}}" />
+
+ <fieldset>
+ <input type="submit"
+ value="continue"
+ class="btn btn-main form-col-2" />
+ </fieldset>
+</form>
+
+{%endblock%}
diff --git a/qc_app/templates/rqtl2/select-probeset-study-id.html b/qc_app/templates/rqtl2/select-probeset-study-id.html
index bb31fde..34aa54e 100644
--- a/qc_app/templates/rqtl2/select-probeset-study-id.html
+++ b/qc_app/templates/rqtl2/select-probeset-study-id.html
@@ -1,5 +1,5 @@
{%extends "base.html"%}
-{%from "flash_messages.html" import flash_messages%}
+{%from "flash_messages.html" import flash_messages, flash_all_messages%}
{%block title%}Upload R/qtl2 Bundle{%endblock%}
@@ -12,9 +12,13 @@
<p>This page gives you the ability to do that.</p>
</div>
+{{flash_all_messages()}}
+
<form method="POST"
- action="#">
- <legend class="heading">Select from existing ProbeSet datasets</legend>
+ action="{{url_for('upload.rqtl2.select_probeset_study',
+ species_id=species.SpeciesId, population_id=population.Id)}}"
+ id="frm:select-probeset-study">
+ <legend class="heading">Select from existing ProbeSet studies</legend>
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<input type="hidden" name="population_id"
@@ -51,9 +55,72 @@
<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
<form method="POST"
- action="#">
- <legend class="heading">Create new ProbeSet dataset</legend>
- <strong style="color: red;font-weight:bold;">Under construction</strong>
+ action="{{url_for('upload.rqtl2.create_probeset_study',
+ species_id=species.SpeciesId, population_id=population.Id)}}"
+ id="frm:create-probeset-study">
+ <legend class="heading">Create new ProbeSet study</legend>
+
+ <input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
+ <input type="hidden" name="population_id"
+ value="{{population.InbredSetId}}" />
+ <input type="hidden" name="rqtl2_bundle_file"
+ value="{{rqtl2_bundle_file}}" />
+ <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" />
+
+ <fieldset>
+ <label for="select:platform">Platform</label>
+ <select id="select:platform"
+ name="platformid"
+ required="required"
+ {%if platforms | length == 0%}disabled="disabled"{%endif%}>
+ <option value="">Select a platform</option>
+ {%for platform in platforms%}
+ <option value="{{platform.GeneChipId}}">
+ {{platform.GeneChipName}} ({{platform.Name}})
+ </option>
+ {%endfor%}
+ </select>
+ </fieldset>
+
+ <fieldset>
+ <label for="select:tissue">Tissue</label>
+ <select id="select:tissue"
+ name="tissueid"
+ required="required"
+ {%if tissues | length == 0%}disabled="disabled"{%endif%}>
+ <option value="">Select tissue</option>
+ {%for tissue in tissues%}
+ <option value="{{tissue.Id}}">
+ {{tissue.TissueName}} ({{tissue.Short_Name}})
+ </option>
+ {%endfor%}
+ </select>
+ </fieldset>
+
+ <fieldset>
+ <label for="txt:studyname">Study name</label>
+ <input type="text" id="txt:studyname" name="studyname"
+ placeholder="Name of the study. (Required)"
+ required="required" />
+ </fieldset>
+
+ <fieldset>
+ <label for="txt:studyfullname">Study name</label>
+ <input type="text" id="txt:studyfullname" name="studyfullname"
+ placeholder="Longer name of the study. (Optional)" />
+ </fieldset>
+
+ <fieldset>
+ <label for="txt:studyshortname">Study name</label>
+ <input type="text" id="txt:studyshortname" name="studyshortname"
+ placeholder="Shorter name of the study. (Optional)" />
+ </fieldset>
+
+ <fieldset>
+ <input type="submit"
+ value="create study"
+ class="btn btn-main form-col-2" />
+ </fieldset>
</form>
{%endblock%}