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Diffstat (limited to 'qc_app/templates/rqtl2/select-tissue.html')
-rw-r--r-- | qc_app/templates/rqtl2/select-tissue.html | 112 |
1 files changed, 112 insertions, 0 deletions
diff --git a/qc_app/templates/rqtl2/select-tissue.html b/qc_app/templates/rqtl2/select-tissue.html new file mode 100644 index 0000000..6f7d134 --- /dev/null +++ b/qc_app/templates/rqtl2/select-tissue.html @@ -0,0 +1,112 @@ +{%extends "base.html"%} +{%from "flash_messages.html" import flash_messages%} + +{%block title%}Upload R/qtl2 Bundle{%endblock%} + +{%block contents%} +<h2 class="heading">Tissue</h2> + +<div class="explainer"> + <p>The data you are uploading concerns a tissue, cell, organ, or other + biological material used in an experiment.</p> + <p>Select the appropriate biological material below</p> +</div> + +{%if tissues | length > 0%} +<form method="POST" + action="{{url_for('upload.rqtl2.select_tissue', + species_id=species.SpeciesId, population_id=population.Id)}}" + id="frm:select-probeset-dataset"> + <legend class="heading">Select from existing ProbeSet datasets</legend> + {{flash_messages("error-select-tissue")}} + + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <input type="hidden" name="population_id" + value="{{population.InbredSetId}}" /> + <input type="hidden" name="rqtl2_bundle_file" + value="{{rqtl2_bundle_file}}" /> + <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" /> + + <fieldset> + <label for="select-tissue">Tissue</label> + <select id="select-tissue" + name="tissueid" + required="required" + {%if tissues | length == 0%}disabled="disabled"{%endif%}> + <option value="">Select a tissue</option> + {%for tissue in tissues%} + <option value={{tissue.Id}}> + {{tissue.Name}} + {%if tissue.Short_Name%} + -- ({{tissue.Short_Name}}) + {%endif%} + </option> + {%endfor%} + </select> + + <span class="form-col-2">Select from existing biological material.</span> + </fieldset> + + <fieldset> + <input type="submit" + value="use selected" + class="btn btn-main form-col-2" /> + </fieldset> +</form> + +<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p> +{%endif%} + +<div class="explainer"> + <p>If you cannot find the biological material in the drop-down above, add it + to the system below.</p> +</div> + +<form method="POST" + action="{{url_for('upload.rqtl2.create_tissue', + species_id=species.SpeciesId, population_id=population.Id)}}" + id="frm:create-probeset-dataset"> + <legend class="heading">Add new tissue, organ or biological material</legend> + {{flash_messages("error-create-tissue")}} + + <input type="hidden" name="species_id" value="{{species.SpeciesId}}" /> + <input type="hidden" name="population_id" + value="{{population.InbredSetId}}" /> + <input type="hidden" name="rqtl2_bundle_file" + value="{{rqtl2_bundle_file}}" /> + <input type="hidden" name="geno-dataset-id" value="{{geno_dataset.Id}}" /> + + <fieldset> + <label for="tissue-name">name</label> + <input type="text" + id="txt-tissuename" + name="tissuename" + required="required" + title = "A name to identify the tissue, organ or biological material." /> + + <span class="form-col-2"> + A name to identify the tissue, organ or biological material. + </span> + </fieldset> + + <fieldset> + <label for="txt-shortname">short name</label> + <input type="text" id="txt-tissueshortname" name="tissueshortname" + required="required" + maxlength="7" + title="A short name (e.g. 'Mam') for the biological material." /> + + <span class="form-col-2"> + Provide a short name for the tissue, organ or biological material used in + the experiment. + </span> + </fieldset> + + <fieldset> + <input type="submit" + value="add new material" + class="btn btn-main form-col-2" /> + </fieldset> +</form> + +{%endblock%} |