aboutsummaryrefslogtreecommitdiff
path: root/qc_app/templates/index.html
diff options
context:
space:
mode:
Diffstat (limited to 'qc_app/templates/index.html')
-rw-r--r--qc_app/templates/index.html81
1 files changed, 0 insertions, 81 deletions
diff --git a/qc_app/templates/index.html b/qc_app/templates/index.html
deleted file mode 100644
index 89d2ae9..0000000
--- a/qc_app/templates/index.html
+++ /dev/null
@@ -1,81 +0,0 @@
-{%extends "base.html"%}
-
-{%block title%}Data Upload{%endblock%}
-
-{%block contents%}
-<div class="row">
- <h1 class="heading">data upload</h1>
-
- <div class="explainer">
- <p>Each of the sections below gives you a different option for data upload.
- Please read the documentation for each section carefully to understand what
- each section is about.</p>
- </div>
-</div>
-
-<div class="row">
- <h2 class="heading">R/qtl2 Bundles</h2>
-
- <div class="explainer">
- <p>This feature combines and extends the two upload methods below. Instead of
- uploading one item at a time, the R/qtl2 bundle you upload can contain both
- the genotypes data (samples/individuals/cases and their data) and the
- expression data.</p>
- <p>The R/qtl2 bundle, additionally, can contain extra metadata, that neither
- of the methods below can handle.</p>
-
- <a href="{{url_for('upload.rqtl2.select_species')}}"
- title="Upload a zip bundle of R/qtl2 files">
- <button class="btn btn-primary">upload R/qtl2 bundle</button></a>
- </div>
-</div>
-
-
-<div class="row">
- <h2 class="heading">Expression Data</h2>
-
- <div class="explainer">
- <p>This feature enables you to upload expression data. It expects the data to
- be in <strong>tab-separated values (TSV)</strong> files. The data should be
- a simple matrix of <em>phenotype × sample</em>, i.e. The first column is a
- list of the <em>phenotypes</em> and the first row is a list of
- <em>samples/cases</em>.</p>
-
- <p>If you haven't done so please go to this page to learn the requirements for
- file formats and helpful suggestions to enter your data in a fast and easy
- way.</p>
-
- <ol>
- <li><strong>PLEASE REVIEW YOUR DATA.</strong>Make sure your data complies
- with our system requirements. (
- <a href="{{url_for('entry.data_review')}}#data-concerns"
- title="Details for the data expectations.">Help</a>
- )</li>
- <li><strong>UPLOAD YOUR DATA FOR DATA VERIFICATION.</strong> We accept
- <strong>.csv</strong>, <strong>.txt</strong> and <strong>.zip</strong>
- files (<a href="{{url_for('entry.data_review')}}#file-types"
- title="Details for the data expectations.">Help</a>)</li>
- </ol>
- </div>
-
- <a href="{{url_for('entry.upload_file')}}"
- title="Upload your expression data"
- class="btn btn-primary">upload expression data</a>
-</div>
-
-<div class="row">
- <h2 class="heading">samples/cases</h2>
-
- <div class="explainer">
- <p>For the expression data above, you need the samples/cases in your file to
- already exist in the GeneNetwork database. If there are any samples that do
- not already exist the upload of the expression data will fail.</p>
- <p>This section gives you the opportunity to upload any missing samples</p>
- </div>
-
- <a href="{{url_for('samples.select_species')}}"
- title="Upload samples/cases/individuals for your data"
- class="btn btn-primary">upload Samples/Cases</a>
-</div>
-
-{%endblock%}