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diff --git a/qc_app/templates/data_review.html b/qc_app/templates/data_review.html deleted file mode 100644 index b7528fd..0000000 --- a/qc_app/templates/data_review.html +++ /dev/null @@ -1,85 +0,0 @@ -{%extends "base.html"%} - -{%block title%}Data Review{%endblock%} - -{%block contents%} -<h1 class="heading">data review</h1> - -<div class="row"> - <h2 id="data-concerns">Data Concerns</h2> - <p>The following are some of the requirements that the data in your file - <strong>MUST</strong> fulfil before it is considered valid for this system: - </p> - - <ol> - <li>File headings - <ul> - <li>The first row in the file should contains the headings. The number of - headings in this first row determines the number of columns expected for - all other lines in the file.</li> - <li>Each heading value in the first row MUST appear in the first row - <strong>ONE AND ONLY ONE</strong> time</li> - <li>The sample/cases (previously 'strains') headers in your first row will be - against those in the <a href="https://genenetwork.org" - title="Link to the GeneNetwork service"> - GeneNetwork</a> database.<br /> - <small class="text-muted"> - If you encounter an error saying your sample(s)/case(s) do not exist - in the GeneNetwork database, then you will have to use the - <a href="{{url_for('samples.select_species')}}" - title="Upload samples/cases feature">Upload Samples/Cases</a> - option on this system to upload them. - </small> - </ul> - </li> - - <li>Data - <ol> - <li><strong>NONE</strong> of the data cells/fields is allowed to be empty. - All fields/cells <strong>MUST</strong> contain a value.</li> - <li>The first column of the data rows will be considered a textual field, - holding the "identifier" for that row<li> - <li>Except for the first column/field for each data row, - <strong>NONE</strong> of the data columns/cells/fields should contain - spurious characters like `eeeee`, `5.555iloveguix`, etc...<br /> - All of them should be decimal values</li> - <li>decimal numbers must conform to the following criteria: - <ul> - <li>when checking an average file decimal numbers must have exactly three - decimal places to the right of the decimal point.</li> - <li>when checking a standard error file decimal numbers must have six or - greater decimal places to the right of the decimal point.</li> - <li>there must be a number to the left side of the decimal place - (e.g. 0.55555 is allowed but .55555 is not).</li> - </ul> - </li> - </ol> - </li> - </ol> -</div> - - -<div class="row"> - <h2 id="file-types">Supported File Types</h2> - We support the following file types: - - <ul> - <li>Tab-Separated value files (.tsv) - <ul> - <li>The <strong>TAB</strong> character is used to separate the fields of each - column</li> - <li>The values of each field <strong>ARE NOT</strong> quoted.</li> - <li>Here is an - <a href="https://gitlab.com/fredmanglis/gnqc_py/-/blob/main/tests/test_data/no_data_errors.tsv"> - example file</a> with a single data row.</li> - </ul> - </li> - <li>.txt files: Content has the same format as .tsv file above</li> - <li>.zip files: each zip file should contain - <strong>ONE AND ONLY ONE</strong> file of the .tsv or .txt type above. - <br />Any zip file with more than one file is invalid, and so is an empty - zip file.</li> - </ul> - -</div> -{%endblock%} |