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-rw-r--r--README.org12
1 files changed, 12 insertions, 0 deletions
diff --git a/README.org b/README.org
index 53ac63c..ecf7815 100644
--- a/README.org
+++ b/README.org
@@ -58,6 +58,18 @@ To check for correct type usage in the application, run:
*** Command-Line Version
+Clone this repository
+#+BEGIN_SRC shell
+ git clone http://git.genenetwork.org/fredmanglis/gnqc_py.git
+#+END_SRC
+then install the application
+#+BEGIN_SRC shell
+ $ python3 -m venv .venv
+ $ source .venv/bin/activate
+ (.venv) $ pip install .
+#+END_SRC
+
+
To run qc against a file, the syntax is:
#+BEGIN_SRC shell
python3 -m qc [--strainsfile <strainsfile-path>] [--verbose] <filetype> <filepath>