diff options
| -rw-r--r-- | scripts/load_phenotypes_to_db.py | 11 |
1 files changed, 9 insertions, 2 deletions
diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py index 18f9792..4b6bc9a 100644 --- a/scripts/load_phenotypes_to_db.py +++ b/scripts/load_phenotypes_to_db.py @@ -309,8 +309,15 @@ def load_data(conn: mysqldb.Connection, job: dict) -> int: # 0. Read data from the files: can be multiple files per type # _species = species_by_id(conn, int(_job_metadata["species_id"])) - _population = population_by_species_and_id(conn, _species["SpeciesId"], int(_job_metadata["population_id"])) - _dataset = dataset_by_id(conn, _species["SpeciesId"], _population["Id"], int(_job_metadata["dataset_id"])) + _population = population_by_species_and_id( + conn, + _species["SpeciesId"], + int(_job_metadata["population_id"])) + _dataset = dataset_by_id( + conn, + _species["SpeciesId"], + _population["Id"], + int(_job_metadata["dataset_id"])) # 1. Just retrive the publication: Don't create publications for now. _publication = fetch_publication_by_id( conn, int(_job_metadata.get("publicationid", "0"))) or {"Id": 0} |